Wall clock time and date at job start Sun Mar 29 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.01385 * 2 1 4 4 C 1.54269 * 110.03112 * 238.55765 * 2 1 3 5 5 C 1.54892 * 104.19795 * 264.32711 * 4 2 1 6 6 C 1.54897 * 102.74726 * 322.05853 * 5 4 2 7 7 C 1.53875 * 110.03247 * 121.39320 * 2 1 3 8 8 H 1.09008 * 110.03339 * 359.95166 * 7 2 1 9 9 N 1.46890 * 110.03414 * 238.57036 * 7 2 1 10 10 C 1.46901 * 111.00688 * 154.99930 * 9 7 2 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.08995 * 109.47343 * 298.60749 * 1 2 3 22 22 H 1.09006 * 109.47365 * 58.60934 * 1 2 3 23 23 H 1.09000 * 109.47356 * 178.60554 * 1 2 3 24 24 H 1.09001 * 110.48783 * 23.00566 * 4 2 1 25 25 H 1.09006 * 110.48298 * 145.64628 * 4 2 1 26 26 H 1.08991 * 110.75500 * 80.37313 * 5 4 2 27 27 H 1.09001 * 110.75436 * 203.56488 * 5 4 2 28 28 H 1.08998 * 110.48748 * 279.26780 * 6 5 4 29 29 H 1.08994 * 110.48575 * 156.61965 * 6 5 4 30 30 H 1.00909 * 111.00262 * 31.04753 * 9 7 2 31 31 H 1.09002 * 109.46980 * 59.99769 * 10 9 7 32 32 H 1.09001 * 109.46628 * 300.00190 * 10 9 7 33 33 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 34 34 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 2.3280 -2.1906 -0.7182 6 6 2.8874 -1.9405 0.7044 7 6 2.0571 -0.7531 1.2340 8 1 1.2228 -1.1178 1.8334 9 7 2.9055 0.1342 2.0406 10 6 2.9365 -0.2991 3.4439 11 6 3.8275 0.6474 4.2506 12 6 3.8591 0.1964 5.7122 13 6 4.7373 1.1285 6.5067 14 1 5.2238 1.9597 6.0180 15 6 4.9188 0.9206 7.8576 16 7 4.3259 -0.0913 8.4526 17 14 6.0067 2.0764 8.8424 18 1 6.5525 3.1268 7.9458 19 1 5.2060 2.7125 9.9193 20 1 7.1260 1.3090 9.4453 21 1 -0.3634 0.4920 0.9022 22 1 -0.3634 0.5353 -0.8773 23 1 -0.3634 -1.0273 -0.0250 24 1 1.3061 -0.7705 -2.0252 25 1 2.9811 -0.3007 -1.5965 26 1 1.4031 -2.7654 -0.6740 27 1 3.0651 -2.6949 -1.3431 28 1 3.9439 -1.6764 0.6579 29 1 2.7400 -2.8192 1.3321 30 1 2.6006 1.0932 1.9650 31 1 3.3349 -1.3120 3.5026 32 1 1.9258 -0.2820 3.8517 33 1 3.4287 1.6602 4.1918 34 1 4.8381 0.6308 3.8428 35 1 4.2577 -0.8164 5.7714 36 1 2.8483 0.2134 6.1196 37 1 4.4539 -0.2377 9.4030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070829712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:09 Heat of formation + Delta-G solvation = -38.569545 kcal Electronic energy + Delta-G solvation = -13896.877710 eV Core-core repulsion = 11672.318195 eV Total energy + Delta-G solvation = -2224.559516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94371 -35.31741 -33.11099 -31.11212 -30.89730 -27.49339 -26.00530 -24.39656 -22.25397 -20.45741 -20.27262 -19.24676 -16.27147 -15.86961 -15.23001 -15.14055 -14.45434 -13.93806 -13.65718 -13.35105 -12.72012 -12.53176 -12.28563 -12.14211 -11.49495 -11.23033 -11.03947 -10.97632 -10.77808 -10.70847 -10.57938 -10.53324 -10.48212 -10.36869 -9.64859 -9.28219 -8.99591 -8.31479 -8.08052 -5.96447 -3.98294 3.33531 3.40719 3.45530 4.41035 4.51180 4.52007 4.60393 4.91979 5.27785 5.30544 5.37178 5.39436 5.53163 5.57932 5.66488 5.75403 5.85814 5.87362 5.90759 5.98859 6.02877 6.10800 6.20653 6.28003 6.38171 6.43425 6.77667 6.86372 7.18798 7.47387 7.71680 7.73739 7.88329 8.04483 8.48035 9.09271 9.65597 11.15126 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067436 B = 0.004696 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.111449 B = 5961.094008 C = 6029.083034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.115 4.115 7 C 0.084 3.916 8 H 0.044 0.956 9 N -0.686 5.686 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.336 0.664 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -1.976 -17.440 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.153 4.153 7 C -0.026 4.026 8 H 0.062 0.938 9 N -0.317 5.317 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.864 -2.380 -17.424 18.538 hybrid contribution -0.347 0.824 1.053 1.382 sum -6.211 -1.556 -16.371 17.579 Atomic orbital electron populations 1.21893 0.95150 1.01695 1.01487 1.21944 0.95283 0.99800 0.94880 0.90582 1.22356 1.00648 0.95638 0.96667 1.22473 1.00468 0.96589 0.96669 1.22427 1.00798 0.96969 0.95086 1.22258 0.93494 0.93550 0.93283 0.93758 1.60735 1.54883 1.05525 1.10531 1.22156 0.98406 1.00233 0.86145 1.21619 0.98297 0.97029 0.97538 1.19074 0.96947 0.96698 0.88923 1.21308 1.28619 1.12201 0.93444 0.92624 1.25033 0.96063 0.95492 0.97970 1.69980 1.43802 1.29366 1.10518 0.86543 0.80438 0.80989 0.80080 1.19720 1.21069 1.21017 0.92816 0.92741 0.92660 0.92008 0.91518 0.91968 0.91772 0.90321 0.92255 0.84600 0.91606 0.95949 0.93745 0.92605 0.96597 0.96852 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.83 37.16 0.33 -1.05 16 2 C -0.10 -1.08 3.18 -89.50 -0.28 -1.36 16 3 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 4 C -0.12 -1.12 6.37 -25.07 -0.16 -1.28 16 5 C -0.12 -1.24 6.91 -24.73 -0.17 -1.41 16 6 C -0.11 -1.42 6.49 -25.07 -0.16 -1.58 16 7 C 0.08 1.10 2.90 -66.60 -0.19 0.90 16 8 H 0.04 0.61 7.34 -51.92 -0.38 0.23 16 9 N -0.69 -10.47 6.27 -105.55 -0.66 -11.13 16 10 C 0.06 1.07 5.51 -3.83 -0.02 1.05 16 11 C -0.11 -2.29 5.41 -26.74 -0.14 -2.44 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.52 7.84 -51.93 -0.41 0.12 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.34 4.83 8.01 -39.29 -0.31 4.51 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -30.07 296.09 -8.78 -38.86 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.94 Total: -1.85 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.36 Total: -20.60 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.08 Total: -37.90 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.07 -8.78 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070829712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.288 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds