Wall clock time and date at job start Sun Mar 29 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.01385 * 2 1 4 4 C 1.54269 * 110.03112 * 238.55765 * 2 1 3 5 5 C 1.54892 * 104.19795 * 264.32711 * 4 2 1 6 6 C 1.54897 * 102.74726 * 322.05853 * 5 4 2 7 7 C 1.53875 * 110.03247 * 121.39320 * 2 1 3 8 8 H 1.09008 * 110.03339 * 359.95166 * 7 2 1 9 9 N 1.46890 * 110.03414 * 238.57036 * 7 2 1 10 10 C 1.46901 * 111.00688 * 154.99930 * 9 7 2 11 11 C 1.52992 * 109.47859 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.08995 * 109.47343 * 298.60749 * 1 2 3 22 22 H 1.09006 * 109.47365 * 58.60934 * 1 2 3 23 23 H 1.09000 * 109.47356 * 178.60554 * 1 2 3 24 24 H 1.09001 * 110.48783 * 23.00566 * 4 2 1 25 25 H 1.09006 * 110.48298 * 145.64628 * 4 2 1 26 26 H 1.08991 * 110.75500 * 80.37313 * 5 4 2 27 27 H 1.09001 * 110.75436 * 203.56488 * 5 4 2 28 28 H 1.08998 * 110.48748 * 279.26780 * 6 5 4 29 29 H 1.08994 * 110.48575 * 156.61965 * 6 5 4 30 30 H 1.00909 * 111.00262 * 31.04753 * 9 7 2 31 31 H 1.09002 * 109.46980 * 59.99769 * 10 9 7 32 32 H 1.09001 * 109.46628 * 300.00190 * 10 9 7 33 33 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 34 34 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 2.3280 -2.1906 -0.7182 6 6 2.8874 -1.9405 0.7044 7 6 2.0571 -0.7531 1.2340 8 1 1.2228 -1.1178 1.8334 9 7 2.9055 0.1342 2.0406 10 6 2.9365 -0.2991 3.4439 11 6 3.8275 0.6474 4.2506 12 6 3.8591 0.1964 5.7122 13 6 4.7373 1.1285 6.5067 14 1 5.2238 1.9597 6.0180 15 6 4.9188 0.9206 7.8576 16 7 4.3259 -0.0913 8.4526 17 14 6.0067 2.0764 8.8424 18 1 6.5525 3.1268 7.9458 19 1 5.2060 2.7125 9.9193 20 1 7.1260 1.3090 9.4453 21 1 -0.3634 0.4920 0.9022 22 1 -0.3634 0.5353 -0.8773 23 1 -0.3634 -1.0273 -0.0250 24 1 1.3061 -0.7705 -2.0252 25 1 2.9811 -0.3007 -1.5965 26 1 1.4031 -2.7654 -0.6740 27 1 3.0651 -2.6949 -1.3431 28 1 3.9439 -1.6764 0.6579 29 1 2.7400 -2.8192 1.3321 30 1 2.6006 1.0932 1.9650 31 1 3.3349 -1.3120 3.5026 32 1 1.9258 -0.2820 3.8517 33 1 3.4287 1.6602 4.1918 34 1 4.8381 0.6308 3.8428 35 1 4.2577 -0.8164 5.7714 36 1 2.8483 0.2134 6.1196 37 1 4.4539 -0.2377 9.4030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070829712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:09 Heat of formation + Delta-G solvation = -56.394838 kcal Electronic energy + Delta-G solvation = -13897.650673 eV Core-core repulsion = 11672.318195 eV Total energy + Delta-G solvation = -2225.332478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92789 -36.87295 -35.04908 -32.72237 -31.92782 -28.93264 -27.35835 -25.68184 -23.90716 -22.08698 -21.29584 -20.32178 -18.48167 -16.96787 -16.57511 -16.40855 -16.13768 -15.26691 -15.09448 -14.29120 -14.20437 -13.92724 -13.59454 -13.37902 -13.14749 -12.81316 -12.61928 -12.49627 -12.11174 -11.91330 -11.84828 -11.62054 -11.49844 -11.48508 -11.35124 -11.32235 -11.01742 -10.57042 -9.35227 -8.21131 -6.32487 1.39725 1.40232 1.54037 2.40652 3.11983 3.23907 3.61924 3.74052 4.04168 4.21279 4.34704 4.46112 4.49255 4.52459 4.62354 4.69660 4.72259 4.82123 4.92319 4.98926 5.05117 5.09459 5.13845 5.21283 5.22795 5.27156 5.34067 5.40689 5.51832 5.54105 5.73046 5.84299 6.14273 6.27434 6.52236 6.84498 7.36992 8.91214 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067436 B = 0.004696 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.111449 B = 5961.094008 C = 6029.083034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.118 4.118 7 C 0.080 3.920 8 H 0.037 0.963 9 N -0.685 5.685 10 C 0.074 3.926 11 C -0.092 4.092 12 C 0.024 3.976 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.342 0.658 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.052 0.948 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -1.117 -18.683 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.030 4.030 8 H 0.055 0.945 9 N -0.317 5.317 10 C -0.056 4.056 11 C -0.130 4.130 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.064 0.936 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.840 -1.518 -18.690 19.640 hybrid contribution -0.375 0.519 1.436 1.573 sum -6.215 -1.000 -17.254 18.366 Atomic orbital electron populations 1.21871 0.94047 1.02103 1.01909 1.21925 0.96157 0.99454 0.94095 0.90729 1.22355 1.01132 0.94956 0.96498 1.22456 1.01021 0.97172 0.94916 1.22434 0.99944 0.96437 0.96853 1.22386 0.93030 0.93719 0.93830 0.94526 1.60682 1.55978 1.06366 1.08660 1.21840 0.97259 0.98843 0.87612 1.21373 0.98973 0.97952 0.94674 1.18981 0.95005 0.95211 0.92124 1.21728 1.29252 1.12785 0.94348 0.92215 1.26013 0.97474 0.97212 0.99227 1.70109 1.45139 1.31146 1.11118 0.85361 0.78350 0.78755 0.78347 1.18572 1.20226 1.20269 0.93567 0.91110 0.92335 0.90137 0.91622 0.91041 0.90703 0.91791 0.92891 0.83880 0.92474 0.96274 0.93070 0.92934 0.99148 0.99151 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.83 71.98 0.64 -1.76 16 2 C -0.10 -1.91 3.18 -10.07 -0.03 -1.94 16 3 H 0.07 1.50 7.47 -2.39 -0.02 1.48 16 4 C -0.11 -1.88 6.37 31.67 0.20 -1.68 16 5 C -0.12 -2.11 6.91 31.89 0.22 -1.89 16 6 C -0.12 -2.85 6.49 31.67 0.21 -2.64 16 7 C 0.08 2.02 2.90 45.64 0.13 2.15 16 8 H 0.04 0.99 7.34 -2.38 -0.02 0.97 16 9 N -0.69 -20.56 6.27 -487.85 -3.06 -23.62 16 10 C 0.07 2.70 5.51 86.30 0.48 3.17 16 11 C -0.09 -3.98 5.41 30.59 0.17 -3.81 16 12 C 0.02 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 1.09 7.84 -2.39 -0.02 1.07 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.34 9.50 8.01 -89.69 -0.72 8.78 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.02 0.71 8.07 -2.39 -0.02 0.69 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -64.20 296.09 2.39 -61.82 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.28 Total: 10.80 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 2.85 Total: -38.29 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.77 Total: -81.47 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.20 2.39 -61.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070829712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.423 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds