Wall clock time and date at job start Sun Mar 29 2020 21:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.01426 * 2 1 4 4 C 1.54266 * 110.03382 * 121.39092 * 2 1 3 5 5 C 1.54964 * 104.15521 * 142.86505 * 4 2 1 6 6 C 1.54894 * 102.77696 * 322.10882 * 5 4 2 7 7 C 1.53875 * 110.02893 * 238.61246 * 2 1 3 8 8 H 1.09004 * 110.03562 * 121.42689 * 7 2 1 9 9 N 1.46897 * 110.03392 * 0.04326 * 7 2 1 10 10 C 1.46901 * 111.00212 * 164.70927 * 9 7 2 11 11 C 1.52997 * 109.47215 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47139 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47209 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00436 * 359.97438 * 13 12 11 15 15 C 1.37886 * 120.00204 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99580 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00225 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47086 * 89.99625 * 17 15 13 19 19 H 1.48497 * 109.47147 * 209.99993 * 17 15 13 20 20 H 1.48498 * 109.47175 * 329.99811 * 17 15 13 21 21 H 1.08996 * 109.47072 * 175.03864 * 1 2 3 22 22 H 1.08994 * 109.47383 * 55.03537 * 1 2 3 23 23 H 1.09007 * 109.46575 * 295.03796 * 1 2 3 24 24 H 1.09001 * 110.48501 * 261.56651 * 4 2 1 25 25 H 1.08994 * 110.48593 * 24.21502 * 4 2 1 26 26 H 1.09003 * 110.75980 * 203.77762 * 5 4 2 27 27 H 1.08994 * 110.88247 * 80.49739 * 5 4 2 28 28 H 1.08994 * 110.48578 * 279.23875 * 6 5 4 29 29 H 1.09008 * 110.48147 * 156.60072 * 6 5 4 30 30 H 1.00903 * 111.00139 * 40.75735 * 9 7 2 31 31 H 1.09003 * 109.46857 * 300.00410 * 10 9 7 32 32 H 1.08997 * 109.47349 * 59.99767 * 10 9 7 33 33 H 1.09003 * 109.47292 * 299.99836 * 11 10 9 34 34 H 1.09007 * 109.47313 * 60.00082 * 11 10 9 35 35 H 1.09007 * 109.47038 * 299.99571 * 12 11 10 36 36 H 1.08997 * 109.47523 * 59.99401 * 12 11 10 37 37 H 0.96999 * 119.99645 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 3.3137 -1.5009 0.7183 6 6 2.8874 -1.9403 -0.7045 7 6 2.0570 -0.7529 -1.2341 8 1 2.6866 -0.0945 -1.8327 9 7 0.9328 -1.2445 -2.0418 10 6 1.3815 -1.6395 -3.3837 11 6 0.1855 -2.1441 -4.1934 12 6 0.6530 -2.5561 -5.5908 13 6 -0.5251 -3.0525 -6.3886 14 1 -1.5089 -3.0727 -5.9434 15 6 -0.3469 -3.4821 -7.6866 16 7 0.8512 -3.4581 -8.2286 17 14 -1.8072 -4.0982 -8.6753 18 1 -2.4295 -2.9611 -9.3999 19 1 -1.3483 -5.1169 -9.6535 20 1 -2.8046 -4.7063 -7.7585 21 1 -0.3633 -1.0238 -0.0889 22 1 -0.3634 0.5889 -0.8421 23 1 -0.3633 0.4350 0.9312 24 1 2.3299 -0.0527 2.0254 25 1 1.3143 -1.4652 1.5973 26 1 3.5326 -2.3684 1.3411 27 1 4.1730 -0.8318 0.6747 28 1 2.2771 -2.8422 -0.6584 29 1 3.7637 -2.1031 -1.3321 30 1 0.1972 -0.5558 -2.0947 31 1 1.8236 -0.7794 -3.8867 32 1 2.1245 -2.4325 -3.2995 33 1 -0.2570 -3.0041 -3.6905 34 1 -0.5572 -1.3506 -4.2776 35 1 1.0957 -1.6964 -6.0940 36 1 1.3955 -3.3496 -5.5063 37 1 0.9764 -3.7599 -9.1419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070829717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:11 Heat of formation + Delta-G solvation = -31.286049 kcal Electronic energy + Delta-G solvation = -14008.716866 eV Core-core repulsion = 11784.473186 eV Total energy + Delta-G solvation = -2224.243680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.01711 -35.20781 -33.09178 -31.43963 -30.72337 -27.41983 -25.48851 -24.73677 -22.41419 -20.71448 -20.04665 -18.77175 -16.38848 -15.97249 -15.46877 -14.95109 -14.42793 -14.01311 -13.76614 -13.51411 -12.49853 -12.30183 -12.16106 -11.83252 -11.50846 -11.18495 -11.04414 -10.90142 -10.77956 -10.69289 -10.60448 -10.52873 -10.46034 -10.35478 -9.63784 -9.27979 -9.00613 -8.30833 -8.05472 -5.96098 -3.97993 3.34569 3.40510 3.44552 4.43739 4.52663 4.55284 4.61760 4.94660 5.30080 5.38055 5.39639 5.49682 5.53998 5.55906 5.68539 5.81506 5.87590 5.90653 5.94155 6.02977 6.08953 6.19446 6.22822 6.38660 6.41792 6.44121 6.78258 6.86572 7.19337 7.48411 7.72400 7.75090 7.88865 8.04808 8.48308 9.09346 9.65757 11.15428 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063975 B = 0.004980 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.568375 B = 5621.649579 C = 5873.861464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.065 0.935 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.115 4.115 7 C 0.083 3.917 8 H 0.037 0.963 9 N -0.685 5.685 10 C 0.057 3.943 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.339 0.661 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 6.251 16.916 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.084 0.916 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.153 4.153 7 C -0.027 4.027 8 H 0.055 0.945 9 N -0.319 5.319 10 C -0.072 4.072 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.995 5.577 16.994 18.134 hybrid contribution -0.505 0.572 -1.170 1.396 sum 2.490 6.149 15.824 17.159 Atomic orbital electron populations 1.21787 0.94673 1.03159 1.00556 1.21851 0.96437 0.98502 0.94684 0.91624 1.22394 0.97415 0.98791 0.96670 1.22472 0.97423 0.99706 0.96685 1.22422 0.98870 0.98816 0.95177 1.22142 0.92151 0.94806 0.93583 0.94462 1.60901 1.10563 1.45416 1.15001 1.22148 0.99048 0.98790 0.87168 1.21613 0.95550 0.99744 0.97521 1.19066 0.96596 0.96359 0.89575 1.21269 0.94636 1.42134 0.97591 0.92692 1.25036 0.95687 0.95937 0.97883 1.69974 1.21281 1.48006 1.14409 0.86595 0.82867 0.78598 0.79957 1.20721 1.21245 1.19852 0.90655 0.92980 0.93290 0.92214 0.91315 0.91732 0.91946 0.90292 0.92227 0.84030 0.96048 0.91597 0.92622 0.93809 0.96884 0.96599 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.77 37.16 0.29 -1.24 16 2 C -0.10 -1.04 3.50 -89.50 -0.31 -1.36 16 3 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 4 C -0.12 -1.13 6.37 -25.03 -0.16 -1.29 16 5 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 6 C -0.11 -1.43 6.01 -25.07 -0.15 -1.58 16 7 C 0.08 1.09 3.21 -66.60 -0.21 0.88 16 8 H 0.04 0.51 7.97 -51.93 -0.41 0.10 16 9 N -0.69 -10.36 5.26 -105.55 -0.56 -10.92 16 10 C 0.06 1.03 5.51 -3.82 -0.02 1.01 16 11 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 12 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.62 5.46 -17.81 -0.10 1.53 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.07 0.89 7.50 -51.93 -0.39 0.50 16 22 H 0.05 0.54 7.02 -51.93 -0.36 0.18 16 23 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.34 4.86 6.13 -39.29 -0.24 4.61 16 31 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 291.50 15.07 4.39 4.39 Total: -1.00 -29.95 291.50 -8.71 -38.65 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.83 Total: -1.54 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.43 Total: -20.84 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.18 Total: -37.69 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.95 -8.71 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070829717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.369 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds