Wall clock time and date at job start Sun Mar 29 2020 21:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 110.01426 * 2 1 4 4 C 1.54266 * 110.03382 * 121.39092 * 2 1 3 5 5 C 1.54964 * 104.15521 * 142.86505 * 4 2 1 6 6 C 1.54894 * 102.77696 * 322.10882 * 5 4 2 7 7 C 1.53875 * 110.02893 * 238.61246 * 2 1 3 8 8 H 1.09004 * 110.03562 * 121.42689 * 7 2 1 9 9 N 1.46897 * 110.03392 * 0.04326 * 7 2 1 10 10 C 1.46901 * 111.00212 * 164.70927 * 9 7 2 11 11 C 1.52997 * 109.47215 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47139 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47209 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00436 * 359.97438 * 13 12 11 15 15 C 1.37886 * 120.00204 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99580 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00225 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47086 * 89.99625 * 17 15 13 19 19 H 1.48497 * 109.47147 * 209.99993 * 17 15 13 20 20 H 1.48498 * 109.47175 * 329.99811 * 17 15 13 21 21 H 1.08996 * 109.47072 * 175.03864 * 1 2 3 22 22 H 1.08994 * 109.47383 * 55.03537 * 1 2 3 23 23 H 1.09007 * 109.46575 * 295.03796 * 1 2 3 24 24 H 1.09001 * 110.48501 * 261.56651 * 4 2 1 25 25 H 1.08994 * 110.48593 * 24.21502 * 4 2 1 26 26 H 1.09003 * 110.75980 * 203.77762 * 5 4 2 27 27 H 1.08994 * 110.88247 * 80.49739 * 5 4 2 28 28 H 1.08994 * 110.48578 * 279.23875 * 6 5 4 29 29 H 1.09008 * 110.48147 * 156.60072 * 6 5 4 30 30 H 1.00903 * 111.00139 * 40.75735 * 9 7 2 31 31 H 1.09003 * 109.46857 * 300.00410 * 10 9 7 32 32 H 1.08997 * 109.47349 * 59.99767 * 10 9 7 33 33 H 1.09003 * 109.47292 * 299.99836 * 11 10 9 34 34 H 1.09007 * 109.47313 * 60.00082 * 11 10 9 35 35 H 1.09007 * 109.47038 * 299.99571 * 12 11 10 36 36 H 1.08997 * 109.47523 * 59.99401 * 12 11 10 37 37 H 0.96999 * 119.99645 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 3.3137 -1.5009 0.7183 6 6 2.8874 -1.9403 -0.7045 7 6 2.0570 -0.7529 -1.2341 8 1 2.6866 -0.0945 -1.8327 9 7 0.9328 -1.2445 -2.0418 10 6 1.3815 -1.6395 -3.3837 11 6 0.1855 -2.1441 -4.1934 12 6 0.6530 -2.5561 -5.5908 13 6 -0.5251 -3.0525 -6.3886 14 1 -1.5089 -3.0727 -5.9434 15 6 -0.3469 -3.4821 -7.6866 16 7 0.8512 -3.4581 -8.2286 17 14 -1.8072 -4.0982 -8.6753 18 1 -2.4295 -2.9611 -9.3999 19 1 -1.3483 -5.1169 -9.6535 20 1 -2.8046 -4.7063 -7.7585 21 1 -0.3633 -1.0238 -0.0889 22 1 -0.3634 0.5889 -0.8421 23 1 -0.3633 0.4350 0.9312 24 1 2.3299 -0.0527 2.0254 25 1 1.3143 -1.4652 1.5973 26 1 3.5326 -2.3684 1.3411 27 1 4.1730 -0.8318 0.6747 28 1 2.2771 -2.8422 -0.6584 29 1 3.7637 -2.1031 -1.3321 30 1 0.1972 -0.5558 -2.0947 31 1 1.8236 -0.7794 -3.8867 32 1 2.1245 -2.4325 -3.2995 33 1 -0.2570 -3.0041 -3.6905 34 1 -0.5572 -1.3506 -4.2776 35 1 1.0957 -1.6964 -6.0940 36 1 1.3955 -3.3496 -5.5063 37 1 0.9764 -3.7599 -9.1419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070829717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:11 Heat of formation + Delta-G solvation = -48.505375 kcal Electronic energy + Delta-G solvation = -14009.463552 eV Core-core repulsion = 11784.473186 eV Total energy + Delta-G solvation = -2224.990366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02033 -36.78029 -34.99823 -32.81364 -32.04092 -28.90166 -26.97748 -25.76069 -24.18917 -22.06200 -21.41555 -19.79335 -18.49965 -17.06933 -16.77451 -16.54388 -15.96642 -15.44686 -14.89004 -14.49317 -14.33288 -13.92248 -13.46911 -13.10794 -13.01343 -12.79316 -12.58301 -12.43038 -12.00694 -11.87403 -11.84021 -11.61916 -11.50122 -11.44586 -11.41339 -11.33799 -11.01924 -10.56124 -9.31894 -8.20742 -6.32147 1.39760 1.41596 1.53018 2.40876 3.12273 3.26875 3.64800 3.73905 4.05414 4.21688 4.35644 4.44350 4.52439 4.55737 4.68251 4.70652 4.73469 4.81422 4.94085 5.02454 5.02804 5.10142 5.17208 5.23137 5.24251 5.30285 5.36192 5.46928 5.51869 5.59896 5.73587 5.84570 6.14397 6.27873 6.54739 6.84688 7.37218 8.91394 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063975 B = 0.004980 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.568375 B = 5621.649579 C = 5873.861464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.118 4.118 7 C 0.078 3.922 8 H 0.031 0.969 9 N -0.682 5.682 10 C 0.071 3.929 11 C -0.091 4.091 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.345 0.655 31 H 0.017 0.983 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.050 0.950 35 H -0.011 1.011 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 6.740 18.099 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.032 4.032 8 H 0.049 0.951 9 N -0.317 5.317 10 C -0.058 4.058 11 C -0.129 4.129 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.073 6.076 18.199 19.298 hybrid contribution -0.175 0.429 -1.529 1.598 sum 1.898 6.505 16.670 17.994 Atomic orbital electron populations 1.21752 0.94422 1.02335 1.01462 1.21864 0.96629 0.98856 0.93850 0.90470 1.22393 0.97001 0.98953 0.96554 1.22458 0.97968 1.00347 0.94914 1.22427 0.98294 0.97984 0.96953 1.22282 0.91483 0.95245 0.94193 0.95094 1.60857 1.11532 1.46163 1.13098 1.21839 0.97231 0.98309 0.88455 1.21364 0.96796 0.99804 0.94930 1.18974 0.95478 0.94484 0.92341 1.21699 0.95402 1.42600 0.98468 0.92200 1.26019 0.98889 0.95879 0.99140 1.70108 1.23700 1.48720 1.14987 0.85409 0.78955 0.78236 0.78223 1.19641 1.20642 1.18727 0.92130 0.93082 0.91567 0.90242 0.91539 0.90763 0.90944 0.91894 0.92894 0.83356 0.96483 0.92423 0.92911 0.93147 0.99233 0.99160 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.77 71.98 0.56 -2.17 16 2 C -0.09 -1.83 3.50 -10.07 -0.04 -1.86 16 3 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 4 C -0.11 -1.89 6.37 31.69 0.20 -1.69 16 5 C -0.12 -2.16 6.91 31.91 0.22 -1.94 16 6 C -0.12 -2.88 6.01 31.67 0.19 -2.69 16 7 C 0.08 1.96 3.21 45.64 0.15 2.11 16 8 H 0.03 0.83 7.97 -2.39 -0.02 0.81 16 9 N -0.68 -20.30 5.26 -487.84 -2.57 -22.86 16 10 C 0.07 2.60 5.51 86.30 0.48 3.07 16 11 C -0.09 -3.94 5.41 30.59 0.17 -3.77 16 12 C 0.02 1.37 4.97 29.85 0.15 1.52 16 13 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 14 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 17 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H 0.06 1.35 7.50 -2.39 -0.02 1.33 16 22 H 0.05 0.98 7.02 -2.39 -0.02 0.96 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.17 7.85 -2.39 -0.02 1.15 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 29 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.34 9.55 6.13 -89.69 -0.55 9.00 16 31 H 0.02 0.63 8.09 -2.39 -0.02 0.61 16 32 H 0.06 2.20 7.77 -2.39 -0.02 2.18 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -64.04 291.50 2.97 -61.08 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.45 Total: 11.39 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 2.77 Total: -38.80 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -2.28 Total: -80.77 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.04 2.97 -61.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070829717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.573 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds