Wall clock time and date at job start Sun Mar 29 2020 21:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 H 1.09000 * 109.47242 * 305.50388 * 3 2 1 5 5 C 1.50697 * 109.47116 * 185.50667 * 3 2 1 6 6 H 1.08005 * 119.99729 * 240.00555 * 5 3 2 7 7 C 1.37883 * 120.00428 * 59.99707 * 5 3 2 8 8 N 1.31513 * 119.99703 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46642 * 120.00191 * 9 7 5 12 12 H 1.48491 * 109.47112 * 240.00181 * 9 7 5 13 13 N 1.46898 * 109.46944 * 65.50330 * 3 2 1 14 14 C 1.46899 * 110.99932 * 261.25929 * 13 3 2 15 15 H 1.08996 * 110.01616 * 44.08446 * 14 13 3 16 16 C 1.54265 * 110.07351 * 282.66843 * 14 13 3 17 17 C 1.54892 * 104.19744 * 217.08432 * 16 14 13 18 18 C 1.54888 * 102.74792 * 37.94226 * 17 16 14 19 19 C 1.53873 * 110.02945 * 165.47852 * 14 13 3 20 20 H 1.09004 * 110.03035 * 238.66481 * 19 14 13 21 21 C 1.52998 * 110.03695 * 0.04807 * 19 14 13 22 22 H 1.09000 * 109.47103 * 299.03292 * 1 2 3 23 23 H 1.09007 * 109.47688 * 59.03295 * 1 2 3 24 24 H 1.09001 * 109.47806 * 179.03800 * 1 2 3 25 25 H 1.09002 * 109.46853 * 240.00152 * 2 1 3 26 26 H 1.08997 * 109.47339 * 120.00547 * 2 1 3 27 27 H 0.96996 * 119.99790 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00090 * 25.21693 * 13 3 2 29 29 H 1.09009 * 110.48542 * 335.76167 * 16 14 13 30 30 H 1.08994 * 110.48983 * 98.40376 * 16 14 13 31 31 H 1.08996 * 110.75849 * 156.25260 * 17 16 14 32 32 H 1.08995 * 110.75723 * 279.44423 * 17 16 14 33 33 H 1.08997 * 110.49050 * 203.38243 * 18 17 16 34 34 H 1.09001 * 110.49059 * 80.73378 * 18 17 16 35 35 H 1.08995 * 109.46837 * 53.68727 * 21 19 14 36 36 H 1.09005 * 109.47063 * 293.69192 * 21 19 14 37 37 H 1.08995 * 109.47588 * 173.69457 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 -0.8366 5 6 3.5408 1.4446 -0.1363 6 1 4.1525 1.8868 0.6361 7 6 4.1330 0.8819 -1.2471 8 7 3.3881 0.3437 -2.1878 9 14 5.9933 0.8852 -1.4163 10 1 6.5969 1.5468 -0.2318 11 1 6.4846 -0.5133 -1.5057 12 1 6.3772 1.6243 -2.6458 13 7 1.6618 2.0955 1.2603 14 6 0.4560 2.9164 1.0867 15 1 -0.2852 2.3717 0.5019 16 6 0.8144 4.2416 0.3830 17 6 -0.0980 5.2920 1.0635 18 6 -0.1044 4.8322 2.5426 19 6 -0.1282 3.2919 2.4598 20 1 -1.1526 2.9286 2.5417 21 6 0.7304 2.6938 3.5761 22 1 -0.3633 0.4987 0.8985 23 1 -0.3635 0.5288 -0.8812 24 1 -0.3635 -1.0275 -0.0173 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8046 -0.0518 -2.9694 28 1 1.5341 1.4163 1.9954 29 1 1.8643 4.4870 0.5436 30 1 0.5950 4.1791 -0.6828 31 1 0.3278 6.2911 0.9716 32 1 -1.1029 5.2617 0.6424 33 1 -0.9944 5.2006 3.0528 34 1 0.7970 5.1729 3.0520 35 1 1.7691 2.9924 3.4351 36 1 0.6579 1.6065 3.5473 37 1 0.3759 3.0560 4.5410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070831385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:21 Heat of formation + Delta-G solvation = -19.296764 kcal Electronic energy + Delta-G solvation = -14996.887461 eV Core-core repulsion = 12773.163676 eV Total energy + Delta-G solvation = -2223.723785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.64086 -35.31669 -32.10256 -30.95803 -30.16622 -27.36418 -25.38311 -24.37701 -22.58737 -20.43179 -19.51976 -18.34858 -16.34040 -15.51370 -14.73805 -14.59423 -14.24904 -13.55926 -13.23972 -12.83119 -12.56179 -12.09644 -11.70960 -11.50662 -11.21415 -10.93666 -10.71048 -10.60404 -10.56556 -10.44818 -10.30773 -10.23405 -10.06206 -9.93520 -9.67288 -9.55939 -8.91016 -8.26786 -7.03653 -5.91299 -3.93697 3.34798 3.42669 3.48196 4.49662 5.00967 5.04622 5.14045 5.38226 5.56303 5.70384 5.81062 5.92128 5.94350 6.07225 6.08552 6.16488 6.17373 6.28155 6.35713 6.37444 6.43807 6.51423 6.65100 6.72903 6.82077 6.86094 6.96910 7.06406 7.29080 7.53942 7.82589 7.99359 8.41322 8.71770 8.71948 9.14979 9.71205 11.14808 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.009274 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.875245 B = 3018.353975 C = 3283.969776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.084 3.916 15 H 0.036 0.964 16 C -0.110 4.110 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.096 4.096 20 H 0.058 0.942 21 C -0.139 4.139 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.099 0.901 26 H 0.033 0.967 27 H 0.257 0.743 28 H 0.325 0.675 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 4.952 7.006 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.026 4.026 15 H 0.053 0.947 16 C -0.148 4.148 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.115 4.115 20 H 0.077 0.923 21 C -0.197 4.197 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.117 0.883 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.144 0.856 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.516 5.381 6.748 10.814 hybrid contribution 0.222 -0.865 -0.368 0.966 sum -6.293 4.516 6.380 10.035 Atomic orbital electron populations 1.21931 0.99645 0.99230 0.99784 1.22237 0.91447 1.02253 1.02781 1.19200 0.95257 0.88520 0.86259 0.95242 1.21287 0.91397 1.35395 1.04443 0.91993 1.24967 0.97955 0.95827 0.96003 1.69885 1.34477 1.39921 1.09601 0.86513 0.86039 0.77407 0.77857 1.19802 1.21338 1.21303 1.61092 1.31981 1.27974 1.09887 1.22164 0.91970 0.94776 0.93728 0.94650 1.22379 1.00391 0.93695 0.98307 1.22471 0.99529 0.98662 0.95703 1.22358 1.00885 0.95173 0.96668 1.21851 0.98364 0.95438 0.95847 0.92323 1.21752 1.01590 0.99978 0.96373 0.94601 0.93812 0.94835 0.88314 0.94851 0.93287 0.85559 0.90248 0.92656 0.92195 0.92364 0.92773 0.91543 0.90570 0.93198 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.70 37.15 0.32 -2.64 16 2 C -0.15 -3.49 5.11 -26.73 -0.14 -3.63 16 3 C 0.22 5.33 2.00 -68.87 -0.14 5.20 16 4 H 0.03 0.81 7.32 -51.93 -0.38 0.43 16 5 C -0.49 -13.45 8.84 -34.44 -0.30 -13.75 16 6 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.77 11.29 55.43 0.63 -25.15 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.68 -14.14 4.81 -99.79 -0.48 -14.62 16 14 C 0.08 1.53 2.39 -66.60 -0.16 1.37 16 15 H 0.04 0.68 5.86 -51.93 -0.30 0.38 16 16 C -0.11 -1.95 5.93 -25.07 -0.15 -2.10 16 17 C -0.13 -1.78 6.91 -24.74 -0.17 -1.95 16 18 C -0.11 -1.53 6.36 -25.07 -0.16 -1.69 16 19 C -0.10 -1.44 3.50 -89.50 -0.31 -1.75 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.14 -2.01 7.78 37.16 0.29 -1.72 16 22 H 0.03 0.65 6.33 -51.93 -0.33 0.33 16 23 H 0.04 0.89 8.12 -51.92 -0.42 0.46 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 26 H 0.03 0.77 8.02 -51.93 -0.42 0.35 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.32 6.48 5.58 -39.29 -0.22 6.26 16 29 H 0.08 1.56 8.05 -51.92 -0.42 1.15 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.90 7.85 -51.93 -0.41 0.50 16 35 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 36 H 0.05 0.72 7.02 -51.93 -0.36 0.35 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 280.49 15.07 4.23 4.23 Total: -1.00 -27.68 280.49 -8.12 -35.80 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.46 Total: 4.36 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.01 Total: -21.30 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.15 Total: -39.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.68 -8.12 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070831385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.504 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds