Wall clock time and date at job start Sun Mar 29 2020 21:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 H 1.09000 * 109.47242 * 305.50388 * 3 2 1 5 5 C 1.50697 * 109.47116 * 185.50667 * 3 2 1 6 6 H 1.08005 * 119.99729 * 240.00555 * 5 3 2 7 7 C 1.37883 * 120.00428 * 59.99707 * 5 3 2 8 8 N 1.31513 * 119.99703 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46642 * 120.00191 * 9 7 5 12 12 H 1.48491 * 109.47112 * 240.00181 * 9 7 5 13 13 N 1.46898 * 109.46944 * 65.50330 * 3 2 1 14 14 C 1.46899 * 110.99932 * 261.25929 * 13 3 2 15 15 H 1.08996 * 110.01616 * 44.08446 * 14 13 3 16 16 C 1.54265 * 110.07351 * 282.66843 * 14 13 3 17 17 C 1.54892 * 104.19744 * 217.08432 * 16 14 13 18 18 C 1.54888 * 102.74792 * 37.94226 * 17 16 14 19 19 C 1.53873 * 110.02945 * 165.47852 * 14 13 3 20 20 H 1.09004 * 110.03035 * 238.66481 * 19 14 13 21 21 C 1.52998 * 110.03695 * 0.04807 * 19 14 13 22 22 H 1.09000 * 109.47103 * 299.03292 * 1 2 3 23 23 H 1.09007 * 109.47688 * 59.03295 * 1 2 3 24 24 H 1.09001 * 109.47806 * 179.03800 * 1 2 3 25 25 H 1.09002 * 109.46853 * 240.00152 * 2 1 3 26 26 H 1.08997 * 109.47339 * 120.00547 * 2 1 3 27 27 H 0.96996 * 119.99790 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00090 * 25.21693 * 13 3 2 29 29 H 1.09009 * 110.48542 * 335.76167 * 16 14 13 30 30 H 1.08994 * 110.48983 * 98.40376 * 16 14 13 31 31 H 1.08996 * 110.75849 * 156.25260 * 17 16 14 32 32 H 1.08995 * 110.75723 * 279.44423 * 17 16 14 33 33 H 1.08997 * 110.49050 * 203.38243 * 18 17 16 34 34 H 1.09001 * 110.49059 * 80.73378 * 18 17 16 35 35 H 1.08995 * 109.46837 * 53.68727 * 21 19 14 36 36 H 1.09005 * 109.47063 * 293.69192 * 21 19 14 37 37 H 1.08995 * 109.47588 * 173.69457 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 -0.8366 5 6 3.5408 1.4446 -0.1363 6 1 4.1525 1.8868 0.6361 7 6 4.1330 0.8819 -1.2471 8 7 3.3881 0.3437 -2.1878 9 14 5.9933 0.8852 -1.4163 10 1 6.5969 1.5468 -0.2318 11 1 6.4846 -0.5133 -1.5057 12 1 6.3772 1.6243 -2.6458 13 7 1.6618 2.0955 1.2603 14 6 0.4560 2.9164 1.0867 15 1 -0.2852 2.3717 0.5019 16 6 0.8144 4.2416 0.3830 17 6 -0.0980 5.2920 1.0635 18 6 -0.1044 4.8322 2.5426 19 6 -0.1282 3.2919 2.4598 20 1 -1.1526 2.9286 2.5417 21 6 0.7304 2.6938 3.5761 22 1 -0.3633 0.4987 0.8985 23 1 -0.3635 0.5288 -0.8812 24 1 -0.3635 -1.0275 -0.0173 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8046 -0.0518 -2.9694 28 1 1.5341 1.4163 1.9954 29 1 1.8643 4.4870 0.5436 30 1 0.5950 4.1791 -0.6828 31 1 0.3278 6.2911 0.9716 32 1 -1.1029 5.2617 0.6424 33 1 -0.9944 5.2006 3.0528 34 1 0.7970 5.1729 3.0520 35 1 1.7691 2.9924 3.4351 36 1 0.6579 1.6065 3.5473 37 1 0.3759 3.0560 4.5410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070831385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:21 Heat of formation + Delta-G solvation = -34.806691 kcal Electronic energy + Delta-G solvation = -14997.560022 eV Core-core repulsion = 12773.163676 eV Total energy + Delta-G solvation = -2224.396346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05921 -37.05151 -34.10128 -32.33024 -31.71814 -29.12788 -27.00854 -25.71022 -24.42982 -21.92820 -21.14952 -19.76530 -18.34267 -17.05757 -16.49057 -16.24835 -15.64739 -15.23151 -14.76178 -14.39708 -14.05743 -13.68231 -13.28011 -13.10560 -12.93244 -12.75618 -12.44860 -12.24045 -11.94589 -11.89481 -11.81587 -11.61292 -11.53700 -11.45471 -11.43023 -11.17545 -10.85655 -10.40364 -8.77217 -8.04678 -6.15128 1.40201 1.42230 1.54342 2.45454 3.21230 3.72471 3.76920 3.85385 4.20079 4.41983 4.50387 4.51514 4.58739 4.66906 4.70343 4.75507 4.80998 4.91514 5.04499 5.08118 5.11683 5.15987 5.23451 5.29117 5.33840 5.43132 5.46184 5.52277 5.63692 5.68219 5.78890 5.92383 6.39736 6.78373 6.98200 7.04924 7.54625 8.99208 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.009274 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.875245 B = 3018.353975 C = 3283.969776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 C 0.224 3.776 4 H -0.005 1.005 5 C -0.506 4.506 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.079 3.921 15 H 0.026 0.974 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.092 4.092 20 H 0.076 0.924 21 C -0.136 4.136 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.258 0.742 28 H 0.331 0.669 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 5.523 8.508 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C 0.115 3.885 4 H 0.012 0.988 5 C -0.545 4.545 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.310 5.310 14 C -0.031 4.031 15 H 0.044 0.956 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.145 4.145 19 C -0.111 4.111 20 H 0.094 0.906 21 C -0.193 4.193 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.425 5.957 8.264 12.606 hybrid contribution 0.496 -1.029 -0.848 1.422 sum -6.929 4.929 7.417 11.283 Atomic orbital electron populations 1.21776 0.96636 1.00676 1.00223 1.22061 0.94139 1.00899 1.01093 1.18909 0.93680 0.89063 0.86812 0.98756 1.21578 0.93081 1.35451 1.04365 0.93182 1.25693 1.02162 0.95525 0.95744 1.70016 1.36051 1.40337 1.09910 0.85552 0.81018 0.77544 0.77755 1.19465 1.20682 1.20985 1.60987 1.33986 1.27807 1.08202 1.22286 0.90646 0.94105 0.96109 0.95612 1.22354 0.99794 0.95329 0.97735 1.22439 0.99246 0.97900 0.95831 1.22351 1.02219 0.93774 0.96160 1.21857 0.98938 0.96793 0.93509 0.90580 1.21694 1.00297 0.99856 0.97501 0.92776 0.94738 0.92793 0.91609 0.94779 0.93265 0.84887 0.92923 0.94549 0.90899 0.90922 0.89853 0.91746 0.92678 0.93449 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 8.70 71.98 0.63 -4.69 16 2 C -0.14 -6.82 5.11 30.59 0.16 -6.67 16 3 C 0.22 11.42 2.00 44.17 0.09 11.51 16 4 H -0.01 -0.31 7.32 -2.39 -0.02 -0.33 16 5 C -0.51 -28.73 8.84 25.60 0.23 -28.50 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.35 5.29 84.66 0.45 0.80 16 8 N -0.92 -54.17 11.29 21.45 0.24 -53.93 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.68 -28.56 4.81 -469.62 -2.26 -30.82 16 14 C 0.08 2.82 2.39 45.64 0.11 2.93 16 15 H 0.03 0.98 5.86 -2.39 -0.01 0.97 16 16 C -0.11 -4.09 5.93 31.67 0.19 -3.90 16 17 C -0.12 -3.04 6.91 31.89 0.22 -2.82 16 18 C -0.11 -2.55 6.36 31.67 0.20 -2.35 16 19 C -0.09 -2.52 3.50 -10.07 -0.04 -2.56 16 20 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 21 C -0.14 -3.60 7.78 71.98 0.56 -3.04 16 22 H 0.05 1.90 6.33 -2.39 -0.02 1.88 16 23 H 0.03 1.39 8.12 -2.38 -0.02 1.37 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 26 H 0.03 1.58 8.02 -2.39 -0.02 1.56 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.33 13.08 5.58 -89.70 -0.50 12.58 16 29 H 0.05 2.14 8.05 -2.38 -0.02 2.12 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.57 7.85 -2.39 -0.02 1.55 16 35 H 0.05 1.69 7.50 -2.39 -0.02 1.68 16 36 H 0.05 1.26 7.02 -2.38 -0.02 1.25 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -60.53 280.49 3.32 -57.22 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.52 Total: 19.65 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 2.79 Total: -39.29 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.02 Total: -84.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -60.53 3.32 -57.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070831385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.411 kcal (2) G-P(sol) polarization free energy of solvation -60.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds