Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.09000 * 109.46911 * 306.00401 * 3 2 1 5 5 C 1.50701 * 109.47009 * 186.00503 * 3 2 1 6 6 H 1.07999 * 120.00196 * 274.58502 * 5 3 2 7 7 C 1.37879 * 119.99880 * 94.86274 * 5 3 2 8 8 N 1.31514 * 120.00245 * 187.23573 * 7 5 3 9 9 Si 1.86808 * 119.99965 * 7.23607 * 7 5 3 10 10 H 1.48502 * 109.47061 * 85.48837 * 9 7 5 11 11 H 1.48502 * 109.47111 * 205.49210 * 9 7 5 12 12 H 1.48495 * 109.47004 * 325.49200 * 9 7 5 13 13 N 1.46898 * 109.47132 * 66.00905 * 3 2 1 14 14 C 1.46906 * 110.99699 * 205.47877 * 13 3 2 15 15 H 1.08993 * 110.01503 * 327.03055 * 14 13 3 16 16 C 1.54268 * 110.03173 * 88.42963 * 14 13 3 17 17 C 1.55010 * 104.13973 * 95.68686 * 16 14 13 18 18 C 1.54891 * 102.75661 * 37.94527 * 17 16 14 19 19 C 1.53878 * 110.02877 * 205.64192 * 14 13 3 20 20 H 1.08998 * 110.03231 * 0.02562 * 19 14 13 21 21 C 1.53006 * 110.02828 * 121.42990 * 19 14 13 22 22 H 1.09003 * 109.47302 * 60.86988 * 1 2 3 23 23 H 1.08995 * 109.47434 * 180.86938 * 1 2 3 24 24 H 1.09002 * 109.47095 * 300.87404 * 1 2 3 25 25 H 1.09001 * 109.46854 * 239.99737 * 2 1 3 26 26 H 1.09004 * 109.46940 * 120.00400 * 2 1 3 27 27 H 0.96997 * 120.00055 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99884 * 329.42718 * 13 3 2 29 29 H 1.09009 * 110.47915 * 214.35119 * 16 14 13 30 30 H 1.08993 * 110.48832 * 336.99005 * 16 14 13 31 31 H 1.09003 * 110.75983 * 279.62701 * 17 16 14 32 32 H 1.08997 * 110.90210 * 156.33352 * 17 16 14 33 33 H 1.08995 * 110.48764 * 203.37124 * 18 17 16 34 34 H 1.09002 * 110.48538 * 80.72479 * 18 17 16 35 35 H 1.08997 * 109.47163 * 60.00154 * 21 19 14 36 36 H 1.09002 * 109.47012 * 180.02562 * 21 19 14 37 37 H 1.09003 * 109.47050 * 300.00089 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5916 1.9863 -0.8314 5 6 3.5397 1.4450 -0.1486 6 1 4.1689 1.3386 0.7227 7 6 4.1085 1.5888 -1.3964 8 7 5.4075 1.4491 -1.5469 9 14 3.0340 1.9820 -2.8730 10 1 2.8345 3.4508 -2.9628 11 1 3.6959 1.4958 -4.1103 12 1 1.7177 1.3121 -2.7198 13 7 1.6723 2.0918 1.2653 14 6 1.5798 3.5488 1.1018 15 1 2.3051 3.8880 0.3624 16 6 0.1541 3.9417 0.6626 17 6 -0.5600 4.3168 1.9863 18 6 0.5539 5.0409 2.7826 19 6 1.8341 4.2476 2.4490 20 1 2.0267 3.5056 3.2239 21 6 3.0249 5.2007 2.3283 22 1 -0.3634 0.5003 -0.8977 23 1 -0.3634 -1.0275 0.0156 24 1 -0.3633 0.5274 0.8821 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8076 1.5499 -2.4248 28 1 0.8106 1.7133 1.6289 29 1 0.1849 4.7985 -0.0106 30 1 -0.3442 3.0980 0.1853 31 1 -0.8921 3.4222 2.5131 32 1 -1.3991 4.9869 1.7992 33 1 0.3470 4.9992 3.8519 34 1 0.6488 6.0751 2.4514 35 1 2.8124 5.9532 1.5689 36 1 3.1972 5.6901 3.2869 37 1 3.9136 4.6376 2.0433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070831391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -27.320223 kcal Electronic energy + Delta-G solvation = -15008.201417 eV Core-core repulsion = 12784.129709 eV Total energy + Delta-G solvation = -2224.071708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.60172 -35.49197 -32.08610 -30.94040 -30.73177 -27.54114 -26.06607 -24.01669 -22.52465 -20.46015 -19.33206 -18.91975 -16.87532 -15.51626 -15.06389 -14.42443 -13.96385 -13.66892 -13.26668 -12.83277 -12.58920 -12.48896 -12.09063 -11.94749 -11.82168 -11.06400 -10.90072 -10.88357 -10.64168 -10.44499 -10.30590 -10.27076 -10.04825 -9.90635 -9.71693 -9.62176 -9.20553 -8.48978 -7.20093 -6.01942 -3.97768 3.27691 3.36979 3.37910 4.44282 4.92286 4.98086 5.08992 5.25579 5.42437 5.68494 5.81866 5.82734 5.91277 5.94239 5.94490 6.02717 6.05544 6.06141 6.15289 6.17888 6.38807 6.45037 6.51392 6.56398 6.62136 6.71605 6.79344 6.85514 6.91628 7.08437 7.27960 7.79428 8.12422 8.43435 8.83627 9.13788 9.63684 11.11756 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.011801 C = 0.009999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.555577 B = 2372.029496 C = 2799.610818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C 0.185 3.815 4 H 0.004 0.996 5 C -0.488 4.488 6 H 0.079 0.921 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.867 3.133 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.670 5.670 14 C 0.094 3.906 15 H 0.083 0.917 16 C -0.157 4.157 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.085 4.085 20 H 0.080 0.920 21 C -0.140 4.140 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.314 0.686 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 4.892 5.158 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.077 3.923 4 H 0.022 0.978 5 C -0.527 4.527 6 H 0.097 0.903 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.695 3.305 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.301 5.301 14 C -0.017 4.017 15 H 0.102 0.898 16 C -0.197 4.197 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.104 4.104 20 H 0.098 0.902 21 C -0.198 4.198 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.016 4.892 5.245 12.319 hybrid contribution -1.333 0.332 -1.517 2.046 sum -11.349 5.225 3.729 13.038 Atomic orbital electron populations 1.21948 0.98748 1.00258 1.00438 1.21902 0.92182 1.00185 1.01800 1.19684 0.96558 0.89714 0.86386 0.97816 1.20992 0.89202 1.48133 0.94354 0.90318 1.25022 0.94681 0.95239 0.98346 1.69906 1.10164 1.50345 1.23487 0.87020 0.81353 0.79059 0.83100 1.20429 1.21588 1.19130 1.60828 1.36253 1.02063 1.30920 1.22158 0.94045 0.89387 0.96093 0.89836 1.23173 0.98445 1.00976 0.97084 1.22451 0.97228 0.99712 0.96461 1.22471 0.95349 0.98930 0.99118 1.21778 0.93718 0.96691 0.98239 0.90164 1.21814 0.98871 0.98863 1.00222 0.93892 0.93782 0.93470 0.92336 0.92083 0.92827 0.86754 0.92147 0.92136 0.91872 0.92516 0.92367 0.92124 0.93449 0.93678 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.77 37.16 0.36 -2.29 16 2 C -0.12 -2.56 5.49 -26.73 -0.15 -2.71 16 3 C 0.18 4.29 1.56 -68.87 -0.11 4.18 16 4 H 0.00 0.10 4.83 -51.93 -0.25 -0.15 16 5 C -0.49 -13.67 8.89 -34.44 -0.31 -13.97 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.87 21.63 27.08 -169.99 -4.60 17.02 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.37 6.70 56.52 0.38 -5.99 16 13 N -0.67 -13.67 5.91 -99.78 -0.59 -14.26 16 14 C 0.09 1.76 2.66 -66.59 -0.18 1.59 16 15 H 0.08 1.83 7.21 -51.93 -0.37 1.46 16 16 C -0.16 -2.52 6.19 -25.01 -0.15 -2.67 16 17 C -0.12 -1.61 6.91 -24.67 -0.17 -1.78 16 18 C -0.12 -1.61 6.36 -25.07 -0.16 -1.77 16 19 C -0.09 -1.37 3.30 -89.50 -0.29 -1.67 16 20 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 21 C -0.14 -2.21 8.85 37.16 0.33 -1.88 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.73 6.45 -51.93 -0.34 0.40 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.31 5.75 6.21 -39.29 -0.24 5.50 16 29 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 0.99 7.99 -51.93 -0.42 0.58 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 35 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -29.15 287.65 -7.67 -36.82 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.67 Total: 4.01 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.92 Total: -21.11 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.18 Total: -41.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.60 Total: 17.02 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.15 -7.67 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070831391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.502 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds