Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.09000 * 109.46911 * 306.00401 * 3 2 1 5 5 C 1.50701 * 109.47009 * 186.00503 * 3 2 1 6 6 H 1.07999 * 120.00196 * 274.58502 * 5 3 2 7 7 C 1.37879 * 119.99880 * 94.86274 * 5 3 2 8 8 N 1.31514 * 120.00245 * 187.23573 * 7 5 3 9 9 Si 1.86808 * 119.99965 * 7.23607 * 7 5 3 10 10 H 1.48502 * 109.47061 * 85.48837 * 9 7 5 11 11 H 1.48502 * 109.47111 * 205.49210 * 9 7 5 12 12 H 1.48495 * 109.47004 * 325.49200 * 9 7 5 13 13 N 1.46898 * 109.47132 * 66.00905 * 3 2 1 14 14 C 1.46906 * 110.99699 * 205.47877 * 13 3 2 15 15 H 1.08993 * 110.01503 * 327.03055 * 14 13 3 16 16 C 1.54268 * 110.03173 * 88.42963 * 14 13 3 17 17 C 1.55010 * 104.13973 * 95.68686 * 16 14 13 18 18 C 1.54891 * 102.75661 * 37.94527 * 17 16 14 19 19 C 1.53878 * 110.02877 * 205.64192 * 14 13 3 20 20 H 1.08998 * 110.03231 * 0.02562 * 19 14 13 21 21 C 1.53006 * 110.02828 * 121.42990 * 19 14 13 22 22 H 1.09003 * 109.47302 * 60.86988 * 1 2 3 23 23 H 1.08995 * 109.47434 * 180.86938 * 1 2 3 24 24 H 1.09002 * 109.47095 * 300.87404 * 1 2 3 25 25 H 1.09001 * 109.46854 * 239.99737 * 2 1 3 26 26 H 1.09004 * 109.46940 * 120.00400 * 2 1 3 27 27 H 0.96997 * 120.00055 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99884 * 329.42718 * 13 3 2 29 29 H 1.09009 * 110.47915 * 214.35119 * 16 14 13 30 30 H 1.08993 * 110.48832 * 336.99005 * 16 14 13 31 31 H 1.09003 * 110.75983 * 279.62701 * 17 16 14 32 32 H 1.08997 * 110.90210 * 156.33352 * 17 16 14 33 33 H 1.08995 * 110.48764 * 203.37124 * 18 17 16 34 34 H 1.09002 * 110.48538 * 80.72479 * 18 17 16 35 35 H 1.08997 * 109.47163 * 60.00154 * 21 19 14 36 36 H 1.09002 * 109.47012 * 180.02562 * 21 19 14 37 37 H 1.09003 * 109.47050 * 300.00089 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5916 1.9863 -0.8314 5 6 3.5397 1.4450 -0.1486 6 1 4.1689 1.3386 0.7227 7 6 4.1085 1.5888 -1.3964 8 7 5.4075 1.4491 -1.5469 9 14 3.0340 1.9820 -2.8730 10 1 2.8345 3.4508 -2.9628 11 1 3.6959 1.4958 -4.1103 12 1 1.7177 1.3121 -2.7198 13 7 1.6723 2.0918 1.2653 14 6 1.5798 3.5488 1.1018 15 1 2.3051 3.8880 0.3624 16 6 0.1541 3.9417 0.6626 17 6 -0.5600 4.3168 1.9863 18 6 0.5539 5.0409 2.7826 19 6 1.8341 4.2476 2.4490 20 1 2.0267 3.5056 3.2239 21 6 3.0249 5.2007 2.3283 22 1 -0.3634 0.5003 -0.8977 23 1 -0.3634 -1.0275 0.0156 24 1 -0.3633 0.5274 0.8821 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8076 1.5499 -2.4248 28 1 0.8106 1.7133 1.6289 29 1 0.1849 4.7985 -0.0106 30 1 -0.3442 3.0980 0.1853 31 1 -0.8921 3.4222 2.5131 32 1 -1.3991 4.9869 1.7992 33 1 0.3470 4.9992 3.8519 34 1 0.6488 6.0751 2.4514 35 1 2.8124 5.9532 1.5689 36 1 3.1972 5.6901 3.2869 37 1 3.9136 4.6376 2.0433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070831391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -45.764744 kcal Electronic energy + Delta-G solvation = -15009.001232 eV Core-core repulsion = 12784.129709 eV Total energy + Delta-G solvation = -2224.871523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99876 -37.13804 -34.24832 -32.41978 -31.97114 -29.29212 -27.56553 -25.45745 -24.22869 -21.76431 -21.00514 -20.31696 -19.03061 -16.97108 -16.52155 -16.30551 -15.52478 -15.07539 -14.74539 -14.54932 -14.06764 -13.98138 -13.66804 -13.56467 -13.16111 -12.85494 -12.56177 -12.15413 -12.12686 -11.88952 -11.79846 -11.66349 -11.48998 -11.44424 -11.31795 -11.27430 -11.16380 -10.66868 -8.87502 -8.26901 -6.26815 1.28427 1.29384 1.39948 2.32036 3.05704 3.54787 3.76157 3.85497 4.15837 4.37256 4.42560 4.44726 4.50189 4.59320 4.65172 4.73497 4.78955 4.81543 4.91726 4.96400 5.04126 5.10317 5.17081 5.19799 5.25067 5.29877 5.37223 5.40035 5.49317 5.54874 5.65129 5.79189 6.20079 6.62663 6.80237 7.08513 7.38781 8.90992 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.011801 C = 0.009999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.555577 B = 2372.029496 C = 2799.610818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.191 3.809 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.932 3.068 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.245 1.245 13 N -0.678 5.678 14 C 0.087 3.913 15 H 0.040 0.960 16 C -0.154 4.154 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.085 4.085 20 H 0.068 0.932 21 C -0.137 4.137 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.263 0.737 28 H 0.331 0.669 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 5.716 5.475 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.082 3.918 4 H 0.018 0.982 5 C -0.528 4.528 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.168 1.168 13 N -0.310 5.310 14 C -0.023 4.023 15 H 0.059 0.941 16 C -0.194 4.194 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.104 4.104 20 H 0.087 0.913 21 C -0.195 4.195 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.483 5.717 5.586 15.674 hybrid contribution -0.164 0.067 -1.509 1.519 sum -13.647 5.784 4.077 15.373 Atomic orbital electron populations 1.21838 0.94862 1.02279 1.01357 1.21781 0.95605 0.97901 1.00776 1.19481 0.93214 0.91512 0.87581 0.98158 1.21220 0.91739 1.47168 0.92636 0.95456 1.25840 0.95925 0.95287 1.01667 1.70067 1.12342 1.52459 1.24346 0.85956 0.80264 0.79141 0.78937 1.19816 1.21311 1.16843 1.60625 1.37565 1.03274 1.29565 1.22210 0.95127 0.88325 0.96667 0.94146 1.23101 0.96397 1.01026 0.98830 1.22437 0.97507 1.00556 0.94442 1.22422 0.93175 0.98831 1.00502 1.21758 0.95607 0.96731 0.96340 0.91305 1.21782 0.97342 0.98656 1.01702 0.93669 0.91306 0.91775 0.94001 0.92681 0.92801 0.84910 0.91814 0.92323 0.91114 0.90047 0.90322 0.91053 0.92847 0.91138 0.95484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.77 71.98 0.70 -3.77 16 2 C -0.12 -5.00 5.49 30.59 0.17 -4.83 16 3 C 0.19 8.90 1.56 44.17 0.07 8.96 16 4 H 0.00 0.04 4.83 -2.39 -0.01 0.03 16 5 C -0.49 -28.62 8.89 25.60 0.23 -28.39 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.55 5.47 84.66 0.46 1.01 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.93 45.25 27.08 68.60 1.86 47.11 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.24 -10.94 6.70 99.48 0.67 -10.27 16 13 N -0.68 -27.52 5.91 -469.60 -2.78 -30.30 16 14 C 0.09 3.23 2.66 45.64 0.12 3.35 16 15 H 0.04 1.83 7.21 -2.39 -0.02 1.81 16 16 C -0.15 -4.53 6.19 31.71 0.20 -4.33 16 17 C -0.11 -2.50 6.91 31.93 0.22 -2.28 16 18 C -0.11 -2.57 6.36 31.67 0.20 -2.37 16 19 C -0.09 -2.66 3.30 -10.07 -0.03 -2.69 16 20 H 0.07 2.30 7.92 -2.39 -0.02 2.28 16 21 C -0.14 -4.32 8.85 71.98 0.64 -3.68 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 1.74 6.45 -2.39 -0.02 1.73 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.27 16 27 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.33 11.48 6.21 -89.69 -0.56 10.93 16 29 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.06 1.74 7.99 -2.39 -0.02 1.72 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 35 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.42 287.65 2.77 -63.65 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.42 Total: 19.19 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 2.97 Total: -39.02 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -2.48 Total: -90.93 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.86 Total: 47.11 kcal Total: -66.42 2.77 -63.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070831391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.886 kcal (2) G-P(sol) polarization free energy of solvation -66.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds