Wall clock time and date at job start Sun Mar 29 2020 21:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99654 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 H 1.08992 * 109.47534 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47438 * 59.99677 * 6 5 4 9 9 C 1.46899 * 110.99907 * 85.00130 * 8 6 5 10 10 C 1.50700 * 109.47654 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99475 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00504 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00061 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99820 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46791 * 90.00088 * 14 12 10 16 16 H 1.48497 * 109.47183 * 209.99710 * 14 12 10 17 17 H 1.48498 * 109.47399 * 330.00406 * 14 12 10 18 18 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 19 19 H 1.09000 * 109.46986 * 299.99742 * 18 6 5 20 20 C 1.52996 * 109.47346 * 179.97438 * 18 6 5 21 21 C 1.52997 * 109.47415 * 59.99860 * 18 6 5 22 22 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 23 23 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 26 26 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 27 27 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 28 28 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 29 29 H 1.00907 * 111.00012 * 321.05119 * 8 6 5 30 30 H 1.09001 * 109.47293 * 300.00581 * 9 8 6 31 31 H 1.08997 * 109.46984 * 60.00016 * 9 8 6 32 32 H 0.97005 * 120.00351 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47368 * 299.99812 * 20 18 6 34 34 H 1.09004 * 109.47108 * 59.99711 * 20 18 6 35 35 H 1.09001 * 109.47367 * 179.97438 * 20 18 6 36 36 H 1.09001 * 109.46922 * 180.02562 * 21 18 6 37 37 H 1.09000 * 109.47140 * 59.99976 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 1 5.1705 -1.4408 -0.0002 8 7 3.5914 -2.8267 0.0002 9 6 4.4752 -3.6974 -0.7865 10 6 3.9423 -5.1068 -0.7636 11 1 3.0373 -5.3330 -0.2194 12 6 4.6095 -6.1072 -1.4381 13 7 4.1446 -7.3372 -1.4177 14 14 6.1737 -5.7154 -2.3811 15 1 7.3462 -5.8791 -1.4845 16 1 6.3005 -6.6406 -3.5357 17 1 6.1179 -4.3152 -2.8724 18 6 3.5705 -0.7203 1.2490 19 1 3.9335 0.3075 1.2487 20 6 4.0804 -1.4415 2.4982 21 6 2.0405 -0.7209 1.2493 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7490 -1.2491 26 1 1.6768 -0.2075 -2.1392 27 1 3.9330 0.3071 -1.2497 28 1 3.9334 -1.2342 -2.1396 29 1 2.6419 -2.8750 -0.3380 30 1 4.5143 -3.3408 -1.8157 31 1 5.4772 -3.6804 -0.3578 32 1 4.6142 -8.0412 -1.8919 33 1 3.7171 -2.4692 2.4983 34 1 5.1705 -1.4415 2.4983 35 1 3.7174 -0.9274 3.3882 36 1 1.6772 -0.2066 2.1391 37 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078465919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:47 Heat of formation + Delta-G solvation = -31.695612 kcal Electronic energy + Delta-G solvation = -14825.119647 eV Core-core repulsion = 12600.858208 eV Total energy + Delta-G solvation = -2224.261439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29609 -34.65444 -32.90647 -32.09998 -30.38668 -26.94232 -26.31861 -24.95835 -21.87080 -21.16921 -20.27049 -18.56365 -16.72771 -15.55214 -14.81260 -14.30692 -14.18840 -13.73308 -13.63763 -13.25140 -12.72248 -12.30943 -12.17987 -11.98072 -11.81730 -11.54526 -11.34866 -11.14583 -10.93635 -10.67629 -10.54817 -10.28651 -10.15681 -9.88065 -9.72424 -9.58310 -9.21418 -8.56505 -7.32228 -6.03608 -4.00822 3.30019 3.37062 3.39710 4.44000 4.87446 4.92421 4.98030 5.21725 5.29878 5.40205 5.44856 5.61891 5.65414 5.71649 5.79570 5.86925 5.91031 6.00876 6.15158 6.21055 6.21561 6.25883 6.29410 6.41346 6.48232 6.60055 6.67554 6.74444 6.86166 6.96482 7.12378 7.66562 7.98789 8.44559 8.70203 9.04903 9.59146 11.09810 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037055 B = 0.008234 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.443135 B = 3399.618121 C = 3522.142756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.115 4.115 5 C -0.150 4.150 6 C 0.087 3.913 7 H 0.067 0.933 8 N -0.670 5.670 9 C 0.164 3.836 10 C -0.513 4.513 11 H 0.078 0.922 12 C 0.068 3.932 13 N -0.902 5.902 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.268 1.268 18 C -0.076 4.076 19 H 0.057 0.943 20 C -0.137 4.137 21 C -0.107 4.107 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.335 0.665 30 H -0.018 1.018 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 15.360 2.592 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.080 0.920 4 C -0.152 4.152 5 C -0.189 4.189 6 C -0.024 4.024 7 H 0.085 0.915 8 N -0.302 5.302 9 C 0.036 3.964 10 C -0.551 4.551 11 H 0.096 0.904 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.095 4.095 19 H 0.075 0.925 20 C -0.195 4.195 21 C -0.145 4.145 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.000 1.000 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.741 14.994 3.125 15.559 hybrid contribution 0.720 0.347 -1.546 1.740 sum -2.021 15.341 1.579 15.554 Atomic orbital electron populations 1.21830 0.95684 1.01924 1.00961 1.21125 0.94987 0.99176 0.95601 0.91955 1.21574 0.95597 1.00996 0.97067 1.22199 0.96063 1.00646 0.99989 1.21555 0.98620 0.89838 0.92400 0.91462 1.60610 1.06218 1.04669 1.58660 1.20003 0.93129 0.93017 0.90280 1.21081 1.11883 0.90550 1.31626 0.90401 1.24904 0.97380 0.94923 0.96159 1.69901 1.40084 1.00617 1.43489 0.86833 0.84289 0.78475 0.79969 1.20215 1.21303 1.19293 1.21061 0.95238 0.97726 0.95437 0.92503 1.21690 1.00146 1.02136 0.95483 1.21612 0.95386 1.01271 0.96217 0.93063 0.93184 0.92459 0.91368 0.92588 0.92489 0.92092 0.84449 0.99994 0.96250 0.92727 0.90606 0.93660 0.94300 0.92874 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.11 2.72 -90.62 -0.25 -1.36 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.59 4.95 -26.73 -0.13 -1.72 16 5 C -0.15 -2.26 5.52 -26.73 -0.15 -2.41 16 6 C 0.09 1.46 2.30 -67.72 -0.16 1.30 16 7 H 0.07 1.19 7.80 -51.93 -0.41 0.78 16 8 N -0.67 -13.65 4.99 -108.00 -0.54 -14.19 16 9 C 0.16 3.99 4.31 -4.98 -0.02 3.97 16 10 C -0.51 -14.76 9.87 -34.44 -0.34 -15.10 16 11 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 14 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 18 C -0.08 -1.09 2.54 -90.62 -0.23 -1.32 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 20 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 21 C -0.11 -1.44 4.25 -26.73 -0.11 -1.55 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.05 6.26 -51.93 -0.33 0.73 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.02 7.46 -51.93 -0.39 0.63 16 29 H 0.34 6.76 5.56 -39.29 -0.22 6.54 16 30 H -0.02 -0.43 6.49 -51.93 -0.34 -0.77 16 31 H 0.02 0.48 7.49 -51.93 -0.39 0.10 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 1.30 7.60 -51.93 -0.39 0.90 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.12 7.21 -51.93 -0.37 0.75 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -29.55 280.96 -7.66 -37.20 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.65 Total: 1.98 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.81 Total: -19.26 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.23 Total: -41.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.55 -7.66 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078465919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.508 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds