Wall clock time and date at job start Sun Mar 29 2020 21:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99654 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 H 1.08992 * 109.47534 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47438 * 59.99677 * 6 5 4 9 9 C 1.46899 * 110.99907 * 85.00130 * 8 6 5 10 10 C 1.50700 * 109.47654 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99475 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00504 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00061 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99820 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46791 * 90.00088 * 14 12 10 16 16 H 1.48497 * 109.47183 * 209.99710 * 14 12 10 17 17 H 1.48498 * 109.47399 * 330.00406 * 14 12 10 18 18 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 19 19 H 1.09000 * 109.46986 * 299.99742 * 18 6 5 20 20 C 1.52996 * 109.47346 * 179.97438 * 18 6 5 21 21 C 1.52997 * 109.47415 * 59.99860 * 18 6 5 22 22 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 23 23 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 26 26 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 27 27 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 28 28 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 29 29 H 1.00907 * 111.00012 * 321.05119 * 8 6 5 30 30 H 1.09001 * 109.47293 * 300.00581 * 9 8 6 31 31 H 1.08997 * 109.46984 * 60.00016 * 9 8 6 32 32 H 0.97005 * 120.00351 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.47368 * 299.99812 * 20 18 6 34 34 H 1.09004 * 109.47108 * 59.99711 * 20 18 6 35 35 H 1.09001 * 109.47367 * 179.97438 * 20 18 6 36 36 H 1.09001 * 109.46922 * 180.02562 * 21 18 6 37 37 H 1.09000 * 109.47140 * 59.99976 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 1 5.1705 -1.4408 -0.0002 8 7 3.5914 -2.8267 0.0002 9 6 4.4752 -3.6974 -0.7865 10 6 3.9423 -5.1068 -0.7636 11 1 3.0373 -5.3330 -0.2194 12 6 4.6095 -6.1072 -1.4381 13 7 4.1446 -7.3372 -1.4177 14 14 6.1737 -5.7154 -2.3811 15 1 7.3462 -5.8791 -1.4845 16 1 6.3005 -6.6406 -3.5357 17 1 6.1179 -4.3152 -2.8724 18 6 3.5705 -0.7203 1.2490 19 1 3.9335 0.3075 1.2487 20 6 4.0804 -1.4415 2.4982 21 6 2.0405 -0.7209 1.2493 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7490 -1.2491 26 1 1.6768 -0.2075 -2.1392 27 1 3.9330 0.3071 -1.2497 28 1 3.9334 -1.2342 -2.1396 29 1 2.6419 -2.8750 -0.3380 30 1 4.5143 -3.3408 -1.8157 31 1 5.4772 -3.6804 -0.3578 32 1 4.6142 -8.0412 -1.8919 33 1 3.7171 -2.4692 2.4983 34 1 5.1705 -1.4415 2.4983 35 1 3.7174 -0.9274 3.3882 36 1 1.6772 -0.2066 2.1391 37 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078465919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:47 Heat of formation + Delta-G solvation = -49.784857 kcal Electronic energy + Delta-G solvation = -14825.904056 eV Core-core repulsion = 12600.858208 eV Total energy + Delta-G solvation = -2225.045848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52787 -36.21425 -34.60931 -33.63664 -31.83816 -28.75575 -27.38337 -26.30506 -23.55941 -22.64440 -21.38390 -19.89315 -18.81432 -17.10670 -16.20670 -15.92979 -15.64747 -14.97191 -14.84054 -14.65257 -14.54743 -13.88952 -13.71070 -13.20335 -13.07887 -12.74632 -12.69037 -12.56173 -12.46994 -12.06512 -11.97865 -11.84342 -11.60626 -11.45013 -11.16089 -10.89788 -10.82247 -10.76756 -8.96886 -8.30974 -6.34589 1.32553 1.33789 1.45011 2.32433 3.03190 3.58306 3.83243 3.84916 3.93677 4.28622 4.29612 4.49435 4.53577 4.61737 4.68134 4.74448 4.85483 4.89485 4.92604 5.01413 5.06219 5.11543 5.15759 5.19959 5.24310 5.31959 5.35746 5.50853 5.52294 5.57689 5.62346 5.76779 6.02647 6.62153 6.69904 6.83939 7.30660 8.85901 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037055 B = 0.008234 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.443135 B = 3399.618121 C = 3522.142756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.082 3.918 7 H 0.059 0.941 8 N -0.675 5.675 9 C 0.177 3.823 10 C -0.525 4.525 11 H 0.036 0.964 12 C 0.008 3.992 13 N -0.948 5.948 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.253 1.253 18 C -0.071 4.071 19 H 0.083 0.917 20 C -0.135 4.135 21 C -0.105 4.105 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.335 0.665 30 H -0.018 1.018 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 18.118 2.335 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.152 4.152 5 C -0.184 4.184 6 C -0.028 4.028 7 H 0.077 0.923 8 N -0.307 5.307 9 C 0.048 3.952 10 C -0.563 4.563 11 H 0.054 0.946 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.773 3.227 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.177 1.177 18 C -0.090 4.090 19 H 0.101 0.899 20 C -0.193 4.193 21 C -0.143 4.143 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.155 0.845 30 H 0.000 1.000 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.994 17.776 2.881 18.118 hybrid contribution 0.403 -0.526 -1.396 1.545 sum -1.591 17.251 1.485 17.387 Atomic orbital electron populations 1.21809 0.94712 1.01476 1.02214 1.21096 0.95792 0.99521 0.93868 0.90070 1.21573 0.94754 1.00026 0.98812 1.22140 0.96845 1.01515 0.97930 1.21703 0.98261 0.88043 0.94824 0.92258 1.60531 1.05643 1.06775 1.57754 1.19712 0.93375 0.91314 0.90751 1.21356 1.10693 0.93215 1.31027 0.94613 1.25865 1.01313 0.94541 0.97242 1.70053 1.42063 1.01911 1.44819 0.85673 0.79397 0.79044 0.78549 1.19135 1.20549 1.17660 1.21063 0.95880 0.98439 0.93589 0.89880 1.21655 1.00018 1.00637 0.96943 1.21587 0.94651 1.00235 0.97788 0.91677 0.92097 0.93801 0.93870 0.91097 0.89853 0.94057 0.84541 1.00017 0.96391 0.92402 0.93758 0.93833 0.92029 0.91022 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.19 71.98 0.66 -2.17 16 2 C -0.08 -1.84 2.72 -10.79 -0.03 -1.87 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.11 -2.96 4.95 30.59 0.15 -2.81 16 5 C -0.15 -4.10 5.52 30.59 0.17 -3.93 16 6 C 0.08 2.65 2.30 44.92 0.10 2.75 16 7 H 0.06 2.01 7.80 -2.39 -0.02 1.99 16 8 N -0.68 -27.91 4.99 -495.60 -2.47 -30.38 16 9 C 0.18 8.71 4.31 85.56 0.37 9.08 16 10 C -0.52 -31.21 9.87 25.60 0.25 -30.95 16 11 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 12 C 0.01 0.46 5.47 84.66 0.46 0.92 16 13 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 14 Si 0.95 45.19 27.47 68.60 1.88 47.08 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 18 C -0.07 -1.87 2.54 -10.80 -0.03 -1.90 16 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 20 C -0.14 -3.81 9.03 71.98 0.65 -3.16 16 21 C -0.11 -2.60 4.25 30.60 0.13 -2.47 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 25 H 0.04 1.33 6.26 -2.39 -0.01 1.32 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.32 7.46 -2.39 -0.02 1.30 16 29 H 0.33 13.94 5.56 -89.69 -0.50 13.44 16 30 H -0.02 -0.87 6.49 -2.39 -0.02 -0.88 16 31 H 0.02 0.89 7.49 -2.39 -0.02 0.87 16 32 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 33 H 0.04 1.52 7.60 -2.39 -0.02 1.50 16 34 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.44 7.21 -2.39 -0.02 1.43 16 Total: -1.00 -64.92 280.96 3.06 -61.86 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.46 Total: 18.00 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 2.89 Total: -36.52 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.17 Total: -90.42 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -64.92 3.06 -61.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078465919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.076 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds