Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 8 8 N 1.46901 * 109.47186 * 180.02562 * 6 5 4 9 9 C 1.46902 * 110.99667 * 275.00012 * 8 6 5 10 10 C 1.50698 * 109.46989 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99871 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00055 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99868 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00180 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47009 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46725 * 120.00373 * 14 12 10 17 17 H 1.48497 * 109.47300 * 240.00723 * 14 12 10 18 18 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 19 19 H 1.09002 * 109.47131 * 300.00452 * 18 6 5 20 20 C 1.52993 * 109.47165 * 179.97438 * 18 6 5 21 21 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 26 26 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 27 27 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 29 29 H 1.00891 * 111.00205 * 151.04880 * 8 6 5 30 30 H 1.09002 * 109.47232 * 299.99981 * 9 8 6 31 31 H 1.08996 * 109.47728 * 59.99842 * 9 8 6 32 32 H 0.97002 * 120.00261 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46925 * 60.00283 * 20 18 6 34 34 H 1.08996 * 109.47340 * 179.97438 * 20 18 6 35 35 H 1.09002 * 109.47726 * 300.00407 * 20 18 6 36 36 H 1.09001 * 109.47362 * 300.00732 * 21 2 1 37 37 H 1.09002 * 109.46716 * 60.00091 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 1 3.7176 -2.4693 0.0000 8 7 5.5496 -1.4405 -0.0002 9 6 6.0768 -2.5636 -0.7868 10 6 7.5832 -2.5292 -0.7643 11 1 8.0975 -1.7507 -0.2204 12 6 8.3049 -3.4916 -1.4380 13 7 7.6785 -4.4393 -2.1007 14 14 10.1722 -3.4487 -1.4107 15 1 10.6289 -2.2905 -0.6011 16 1 10.6874 -4.7055 -0.8107 17 1 10.6846 -3.3161 -2.7982 18 6 3.5706 -0.7202 1.2490 19 1 3.9335 0.3076 1.2487 20 6 4.0805 -1.4414 2.4982 21 6 2.0400 -0.7212 1.2493 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 -1.7489 -1.2491 26 1 1.6768 -0.2074 -2.1391 27 1 3.9334 -1.2342 -2.1397 28 1 3.9330 0.3071 -1.2497 29 1 5.9112 -1.4575 0.9416 30 1 5.7279 -3.5030 -0.3579 31 1 5.7272 -2.4821 -1.8160 32 1 8.1862 -5.1162 -2.5751 33 1 5.1705 -1.4414 2.4982 34 1 3.7176 -0.9273 3.3882 35 1 3.7173 -2.4691 2.4984 36 1 1.6766 -0.2074 2.1393 37 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078465929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = -38.287901 kcal Electronic energy + Delta-G solvation = -14510.987826 eV Core-core repulsion = 12286.440523 eV Total energy + Delta-G solvation = -2224.547303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.02293 -35.00456 -32.94383 -31.93364 -30.33438 -26.78311 -26.37631 -24.40858 -22.18383 -20.85712 -20.00525 -19.39862 -16.46089 -15.01766 -14.77203 -14.66567 -14.23054 -13.99042 -13.52652 -12.87917 -12.62652 -12.25685 -12.16367 -12.01048 -11.85520 -11.58055 -11.29869 -10.89252 -10.83483 -10.72139 -10.58874 -10.46387 -10.18806 -10.05313 -9.80088 -9.44048 -9.05101 -8.44888 -7.18994 -5.99851 -4.01416 3.32766 3.39846 3.45187 4.45736 4.81119 4.89309 4.98823 5.22208 5.34515 5.36020 5.48509 5.54594 5.69887 5.73709 5.79948 5.84611 5.89513 6.00734 6.05460 6.08730 6.13569 6.29364 6.32407 6.41750 6.49461 6.58744 6.67050 6.77856 6.90047 7.36002 7.49508 7.84520 8.19702 8.50039 8.70693 9.08985 9.63509 11.11345 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.006517 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.404589 B = 4295.699961 C = 4588.668106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.105 4.105 6 C 0.093 3.907 7 H 0.032 0.968 8 N -0.689 5.689 9 C 0.195 3.805 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.093 4.093 19 H 0.073 0.927 20 C -0.151 4.151 21 C -0.104 4.104 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.329 0.671 30 H -0.016 1.016 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 7.142 5.612 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.017 4.017 7 H 0.050 0.950 8 N -0.322 5.322 9 C 0.068 3.932 10 C -0.551 4.551 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.111 4.111 19 H 0.092 0.908 20 C -0.208 4.208 21 C -0.142 4.142 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.002 0.998 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.952 7.424 4.983 14.926 hybrid contribution 0.847 -0.930 0.449 1.336 sum -11.105 6.494 5.432 13.965 Atomic orbital electron populations 1.21835 0.95830 1.01528 1.01147 1.21139 0.94731 0.99732 0.95456 0.91373 1.21604 0.96524 1.00166 0.96801 1.21499 0.93239 1.01140 0.98481 1.21437 0.90205 0.96686 0.93411 0.95013 1.60720 1.03925 1.49340 1.18172 1.19569 0.94724 0.85680 0.93233 1.21255 0.91267 1.11059 1.31497 0.92004 1.24992 0.98788 0.95387 0.95452 1.69977 1.35410 1.15003 1.33440 0.86449 0.85442 0.77808 0.77757 1.19666 1.21136 1.21015 1.21289 0.94723 1.00311 0.94823 0.90836 1.21878 1.01634 1.00220 0.97107 1.21622 0.95229 1.00378 0.97015 0.92890 0.92957 0.93091 0.92390 0.92438 0.91849 0.91869 0.85222 0.99836 0.95462 0.93034 0.91980 0.93055 0.93009 0.92452 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.09 -1.11 2.72 -90.63 -0.25 -1.35 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -1.55 5.20 -26.74 -0.14 -1.69 16 5 C -0.11 -1.80 5.42 -26.73 -0.15 -1.95 16 6 C 0.09 1.70 1.97 -67.71 -0.13 1.57 16 7 H 0.03 0.64 7.80 -51.93 -0.41 0.23 16 8 N -0.69 -15.18 6.30 -107.99 -0.68 -15.86 16 9 C 0.19 5.24 5.24 -4.98 -0.03 5.21 16 10 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 11 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 14 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 18 C -0.09 -1.37 2.39 -90.59 -0.22 -1.58 16 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.15 -2.12 8.96 37.15 0.33 -1.79 16 21 C -0.10 -1.31 4.49 -26.70 -0.12 -1.43 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.22 7.46 -51.93 -0.39 0.83 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.33 6.93 6.16 -39.30 -0.24 6.69 16 30 H -0.02 -0.46 8.06 -51.93 -0.42 -0.88 16 31 H 0.03 0.79 7.44 -51.93 -0.39 0.40 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 287.74 15.07 4.34 4.34 Total: -1.00 -29.83 287.74 -8.18 -38.01 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.78 Total: 0.90 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.77 Total: -17.77 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.06 Total: -42.45 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.83 -8.18 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078465929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.282 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds