Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 8 8 N 1.46901 * 109.47186 * 180.02562 * 6 5 4 9 9 C 1.46902 * 110.99667 * 275.00012 * 8 6 5 10 10 C 1.50698 * 109.46989 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99871 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00055 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99868 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00180 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47009 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46725 * 120.00373 * 14 12 10 17 17 H 1.48497 * 109.47300 * 240.00723 * 14 12 10 18 18 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 19 19 H 1.09002 * 109.47131 * 300.00452 * 18 6 5 20 20 C 1.52993 * 109.47165 * 179.97438 * 18 6 5 21 21 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 26 26 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 27 27 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 29 29 H 1.00891 * 111.00205 * 151.04880 * 8 6 5 30 30 H 1.09002 * 109.47232 * 299.99981 * 9 8 6 31 31 H 1.08996 * 109.47728 * 59.99842 * 9 8 6 32 32 H 0.97002 * 120.00261 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46925 * 60.00283 * 20 18 6 34 34 H 1.08996 * 109.47340 * 179.97438 * 20 18 6 35 35 H 1.09002 * 109.47726 * 300.00407 * 20 18 6 36 36 H 1.09001 * 109.47362 * 300.00732 * 21 2 1 37 37 H 1.09002 * 109.46716 * 60.00091 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 1 3.7176 -2.4693 0.0000 8 7 5.5496 -1.4405 -0.0002 9 6 6.0768 -2.5636 -0.7868 10 6 7.5832 -2.5292 -0.7643 11 1 8.0975 -1.7507 -0.2204 12 6 8.3049 -3.4916 -1.4380 13 7 7.6785 -4.4393 -2.1007 14 14 10.1722 -3.4487 -1.4107 15 1 10.6289 -2.2905 -0.6011 16 1 10.6874 -4.7055 -0.8107 17 1 10.6846 -3.3161 -2.7982 18 6 3.5706 -0.7202 1.2490 19 1 3.9335 0.3076 1.2487 20 6 4.0805 -1.4414 2.4982 21 6 2.0400 -0.7212 1.2493 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.6767 -1.7489 -1.2491 26 1 1.6768 -0.2074 -2.1391 27 1 3.9334 -1.2342 -2.1397 28 1 3.9330 0.3071 -1.2497 29 1 5.9112 -1.4575 0.9416 30 1 5.7279 -3.5030 -0.3579 31 1 5.7272 -2.4821 -1.8160 32 1 8.1862 -5.1162 -2.5751 33 1 5.1705 -1.4414 2.4982 34 1 3.7176 -0.9273 3.3882 35 1 3.7173 -2.4691 2.4984 36 1 1.6766 -0.2074 2.1393 37 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078465929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = -56.617396 kcal Electronic energy + Delta-G solvation = -14511.782652 eV Core-core repulsion = 12286.440523 eV Total energy + Delta-G solvation = -2225.342129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30833 -36.60860 -34.77973 -33.43662 -31.80189 -28.60930 -27.49431 -25.89440 -23.98124 -22.38739 -21.16296 -20.68161 -18.60016 -16.81682 -16.50230 -15.92735 -15.59711 -15.38020 -14.78932 -14.46367 -14.17062 -13.72405 -13.62318 -13.33364 -13.11670 -12.97494 -12.70678 -12.65486 -12.53271 -12.10311 -11.94211 -11.91328 -11.66023 -11.37615 -11.32454 -10.91075 -10.78115 -10.67919 -9.09399 -8.24122 -6.35948 1.39568 1.40663 1.54821 2.38854 3.08865 3.49618 3.75955 3.83216 4.00254 4.14362 4.33369 4.42890 4.52418 4.56563 4.62357 4.76875 4.83417 4.91677 4.94971 5.03805 5.06024 5.09046 5.13133 5.22415 5.26167 5.28532 5.34379 5.42737 5.47590 5.50637 5.60611 5.67581 6.03389 6.48844 6.75215 6.91248 7.35587 8.87957 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.006517 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.404589 B = 4295.699961 C = 4588.668106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.107 4.107 5 C -0.103 4.103 6 C 0.089 3.911 7 H 0.010 0.990 8 N -0.688 5.688 9 C 0.213 3.787 10 C -0.536 4.536 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.976 3.024 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.086 4.086 19 H 0.077 0.923 20 C -0.150 4.150 21 C -0.100 4.100 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.334 0.666 30 H -0.047 1.047 31 H -0.004 1.004 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 8.497 6.772 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.021 4.021 7 H 0.028 0.972 8 N -0.320 5.320 9 C 0.085 3.915 10 C -0.574 4.574 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.800 3.200 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.104 4.104 19 H 0.095 0.905 20 C -0.207 4.207 21 C -0.138 4.138 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.154 0.846 30 H -0.029 1.029 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.340 8.794 6.156 16.355 hybrid contribution 0.926 -1.359 0.070 1.646 sum -11.414 7.435 6.226 14.977 Atomic orbital electron populations 1.21785 0.93819 1.01902 1.02358 1.21127 0.96336 0.99446 0.93838 0.90815 1.21570 0.93537 1.00520 0.98886 1.21467 0.96039 1.00278 0.96346 1.21591 0.87777 0.96332 0.96351 0.97243 1.60638 1.06540 1.46709 1.18109 1.19172 0.94375 0.85926 0.92051 1.21595 0.92235 1.11530 1.32050 0.91777 1.25999 1.04553 0.94657 0.94600 1.70110 1.37777 1.15719 1.33999 0.85242 0.78338 0.78342 0.78105 1.18563 1.20171 1.20302 1.21247 0.96623 0.99711 0.92856 0.90483 1.21871 1.00645 1.00194 0.97991 1.21614 0.93003 1.00699 0.98472 0.92958 0.92172 0.91528 0.92967 0.91002 0.95248 0.91768 0.84570 1.02893 0.98544 0.92601 0.93509 0.90083 0.93690 0.89842 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.09 -1.92 2.72 -10.80 -0.03 -1.95 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -2.85 5.20 30.59 0.16 -2.69 16 5 C -0.10 -3.61 5.42 30.59 0.17 -3.45 16 6 C 0.09 3.36 1.97 44.92 0.09 3.45 16 7 H 0.01 0.40 7.80 -2.39 -0.02 0.38 16 8 N -0.69 -31.34 6.30 -495.58 -3.12 -34.46 16 9 C 0.21 12.04 5.24 85.56 0.45 12.49 16 10 C -0.54 -31.76 9.32 25.60 0.24 -31.52 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.94 -58.22 13.29 21.45 0.28 -57.93 16 14 Si 0.98 45.28 29.54 68.60 2.03 47.30 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 C -0.09 -2.42 2.39 -10.78 -0.03 -2.45 16 19 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 20 C -0.15 -4.01 8.96 71.98 0.64 -3.37 16 21 C -0.10 -2.26 4.49 30.61 0.14 -2.12 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.19 7.46 -2.38 -0.02 1.17 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.33 14.44 6.16 -89.70 -0.55 13.89 16 30 H -0.05 -2.85 8.06 -2.39 -0.02 -2.87 16 31 H 0.00 -0.22 7.44 -2.39 -0.02 -0.24 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.05 1.38 6.21 -2.39 -0.01 1.37 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.59 287.74 2.60 -63.00 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.45 Total: 14.97 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 2.95 Total: -32.88 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.84 Total: -92.39 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.59 2.60 -63.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078465929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.381 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds