Wall clock time and date at job start Sun Mar 29 2020 21:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31450 * 1 3 3 Si 1.86795 * 120.00073 * 2 1 4 4 H 1.48503 * 109.46781 * 269.99602 * 3 2 1 5 5 H 1.48495 * 109.47344 * 29.99951 * 3 2 1 6 6 H 1.48502 * 109.47091 * 150.00203 * 3 2 1 7 7 C 1.38754 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00240 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.34314 * 116.99847 * 179.97438 * 9 7 2 11 11 O 1.21214 * 119.99816 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99972 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.33393 * 125.20065 * 89.99813 * 13 12 10 15 15 C 1.38425 * 114.92007 * 179.97438 * 14 13 12 16 16 C 1.33389 * 114.92135 * 0.02562 * 15 14 13 17 17 S 1.75882 * 125.20483 * 269.69667 * 13 12 10 18 18 H 0.96992 * 119.99574 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47152 * 60.00270 * 12 10 9 20 20 H 1.09001 * 109.46980 * 300.00370 * 12 10 9 21 21 H 1.08005 * 122.54147 * 359.96383 * 14 13 12 22 22 H 1.07995 * 122.53675 * 180.02562 * 15 14 13 23 23 H 1.07999 * 125.20519 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4401 0.7000 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4331 0.0010 12 6 1.3808 -4.8393 0.0011 13 6 2.4187 -5.9320 0.0016 14 6 2.9483 -6.4890 1.0919 15 6 3.8859 -7.4770 0.8453 16 6 4.1181 -7.7220 -0.4451 17 16 3.1115 -6.6730 -1.4351 18 1 -0.4849 0.8400 -0.0004 19 1 0.7577 -4.9300 -0.8886 20 1 0.7583 -4.9295 0.8913 21 1 2.6669 -6.1915 2.0913 22 1 4.3910 -8.0092 1.6377 23 1 4.8140 -8.4559 -0.8242 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082023247.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:17 Heat of formation + Delta-G solvation = -70.590686 kcal Electronic energy + Delta-G solvation = -11380.572089 eV Core-core repulsion = 9092.158958 eV Total energy + Delta-G solvation = -2288.413131 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.04933 -38.75662 -37.18662 -34.32125 -33.19268 -28.67611 -27.13197 -24.41141 -22.11725 -20.12634 -19.88596 -18.53798 -18.00632 -16.81840 -16.55727 -16.32850 -16.05129 -14.47806 -14.29305 -13.94023 -13.63798 -13.42729 -13.28016 -13.11260 -12.55053 -12.29799 -12.17119 -12.01282 -11.67030 -11.09041 -10.70456 -9.61305 -9.36989 -8.54679 -6.34790 0.04397 0.72261 1.11590 1.30144 1.33878 1.51080 1.63764 1.81863 2.15423 2.88940 2.96224 3.66165 4.18148 4.25938 4.48594 4.61724 4.73132 4.84585 5.16931 5.20849 5.39043 5.59836 5.82527 6.65748 6.90355 7.75434 8.65905 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.070551 B = 0.006899 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.780658 B = 4057.353596 C = 4130.416637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.005 4.005 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.421 4.421 8 H 0.080 0.920 9 O -0.245 6.245 10 C 0.397 3.603 11 O -0.573 6.573 12 C -0.027 4.027 13 C -0.180 4.180 14 C -0.135 4.135 15 C -0.141 4.141 16 C -0.206 4.206 17 S 0.083 5.917 18 H 0.279 0.721 19 H 0.119 0.881 20 H 0.134 0.866 21 H 0.146 0.854 22 H 0.169 0.831 23 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -12.456 0.104 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.205 4.205 3 Si 0.836 3.164 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.189 1.189 7 C -0.497 4.497 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.244 3.756 11 O -0.471 6.471 12 C -0.066 4.066 13 C -0.297 4.297 14 C -0.165 4.165 15 C -0.171 4.171 16 C -0.342 4.342 17 S 0.346 5.654 18 H 0.088 0.912 19 H 0.137 0.863 20 H 0.152 0.848 21 H 0.164 0.836 22 H 0.186 0.814 23 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.840 -12.113 -1.457 12.790 hybrid contribution 0.484 0.631 1.447 1.651 sum 4.324 -11.483 -0.010 12.270 Atomic orbital electron populations 1.70073 1.07583 1.29388 1.46952 1.26539 0.96922 1.02314 0.94712 0.84627 0.77639 0.74576 0.79515 1.18487 1.18245 1.18936 1.21397 0.92096 0.81199 1.54991 0.90235 1.83896 1.40283 1.14160 1.77018 1.24244 0.86804 0.88002 0.76557 1.90538 1.17041 1.88530 1.50944 1.19623 0.95664 0.83727 1.07594 1.23920 1.05410 1.03201 0.97178 1.20437 0.98490 0.98226 0.99376 1.20396 0.99729 0.99500 0.97429 1.25971 1.06126 1.05658 0.96414 1.84178 1.37887 1.33128 1.10209 0.91162 0.86281 0.84779 0.83624 0.81413 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.70 13.67 21.63 0.30 -53.40 14 2 C 0.00 -0.27 5.49 84.87 0.47 0.19 14 3 Si 1.02 43.94 29.55 68.60 2.03 45.97 14 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 14 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 14 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 14 7 C -0.42 -25.97 9.65 67.94 0.66 -25.31 14 8 H 0.08 5.00 6.86 -2.91 -0.02 4.98 14 9 O -0.24 -14.60 9.75 14.80 0.14 -14.46 14 10 C 0.40 20.24 7.90 71.24 0.56 20.80 14 11 O -0.57 -32.16 15.27 20.76 0.32 -31.84 14 12 C -0.03 -0.99 6.31 29.10 0.18 -0.80 14 13 C -0.18 -6.06 5.00 24.59 0.12 -5.93 14 14 C -0.13 -4.02 10.05 21.22 0.21 -3.80 14 15 C -0.14 -3.43 10.18 21.22 0.22 -3.22 14 16 C -0.21 -4.88 11.23 66.72 0.75 -4.13 14 17 S 0.08 2.44 23.33 -56.49 -1.32 1.13 14 18 H 0.28 15.01 8.31 -92.71 -0.77 14.24 14 19 H 0.12 3.91 8.14 -2.39 -0.02 3.89 14 20 H 0.13 4.21 8.14 -2.39 -0.02 4.19 14 21 H 0.15 3.97 8.06 -2.91 -0.02 3.95 14 22 H 0.17 2.97 8.06 -2.91 -0.02 2.95 14 23 H 0.19 3.15 8.06 -2.91 -0.02 3.12 14 Total: -1.00 -73.38 234.31 5.86 -67.53 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.22 Total: 7.28 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.17 Total: -22.20 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.30 Total: -53.40 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: 0.46 Total: -46.30 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.32 Total: 1.13 kcal Total: -73.38 5.86 -67.53 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082023247.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.064 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds