Wall clock time and date at job start Sun Mar 29 2020 22:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.56708 * 2 1 4 4 C 1.50443 * 109.56321 * 239.76495 * 2 1 3 5 5 O 1.21274 * 118.48884 * 47.45097 * 4 2 1 6 6 N 1.33388 * 123.02098 * 227.46377 * 4 2 1 7 7 C 1.45646 * 124.58701 * 4.32322 * 6 4 2 8 8 C 1.52992 * 110.77719 * 338.09964 * 7 6 4 9 9 N 1.47051 * 109.56913 * 120.35840 * 2 1 3 10 10 C 1.34765 * 121.35398 * 342.53703 * 9 2 1 11 11 O 1.21690 * 120.00467 * 4.79968 * 10 9 2 12 12 C 1.46376 * 120.00337 * 184.79395 * 10 9 2 13 13 H 1.08007 * 119.99602 * 8.57223 * 12 10 9 14 14 C 1.40042 * 120.00503 * 188.56504 * 12 10 9 15 15 N 1.30678 * 119.99935 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00100 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47154 * 60.00718 * 16 14 12 18 18 H 1.48506 * 109.47118 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47603 * 300.00315 * 16 14 12 20 20 H 1.09005 * 109.46935 * 188.85901 * 1 2 3 21 21 H 1.08996 * 109.47240 * 68.85811 * 1 2 3 22 22 H 1.09002 * 109.47180 * 308.85473 * 1 2 3 23 23 H 0.96991 * 117.70422 * 184.29908 * 6 4 2 24 24 H 1.08998 * 109.21838 * 98.43397 * 7 6 4 25 25 H 1.08997 * 109.21789 * 217.80535 * 7 6 4 26 26 H 1.08994 * 109.71734 * 166.39972 * 8 7 6 27 27 H 1.09001 * 109.71263 * 287.00872 * 8 7 6 28 28 H 0.96997 * 119.99775 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0337 -0.7138 -1.2247 5 8 1.5483 -0.4314 -2.2996 6 7 2.9896 -1.6432 -1.1828 7 6 3.5987 -2.1482 0.0401 8 6 3.4252 -1.1489 1.1855 9 7 2.0225 -0.7003 1.1956 10 6 1.2230 -0.9220 2.2575 11 8 0.0456 -0.6189 2.2066 12 6 1.7708 -1.5277 3.4724 13 1 2.8369 -1.6695 3.5715 14 6 0.9126 -1.9230 4.5060 15 7 -0.3773 -1.7517 4.3859 16 14 1.6118 -2.6952 6.0566 17 1 2.5428 -1.7397 6.7090 18 1 0.5038 -3.0226 6.9895 19 1 2.3447 -3.9376 5.7038 20 1 -0.3633 -1.0155 0.1583 21 1 -0.3633 0.3706 -0.9584 22 1 -0.3634 0.6447 0.8003 23 1 3.3006 -2.0086 -2.0257 24 1 3.1266 -3.0920 0.3128 25 1 4.6620 -2.3154 -0.1313 26 1 3.6640 -1.6310 2.1334 27 1 4.0842 -0.2946 1.0311 28 1 -0.9717 -2.0258 5.1017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082476072.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:26 Heat of formation + Delta-G solvation = -82.036812 kcal Electronic energy + Delta-G solvation = -14620.467896 eV Core-core repulsion = 12056.931399 eV Total energy + Delta-G solvation = -2563.536498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.55353 -39.34821 -37.13854 -35.19058 -34.40089 -32.54966 -29.39601 -28.05582 -25.95190 -23.93046 -22.10402 -20.16177 -18.70214 -18.07068 -17.75573 -17.06158 -16.64742 -16.06729 -15.79845 -15.39380 -14.63464 -14.36683 -13.92824 -13.47495 -13.22338 -13.09652 -12.88805 -12.68161 -12.56360 -12.47320 -12.03442 -11.95910 -11.26219 -10.87475 -10.11571 -9.38306 -9.15595 -8.22168 -6.80504 1.44981 1.47288 1.47832 1.59165 2.17465 2.28263 2.49937 2.66743 3.53887 3.62297 3.98574 4.17333 4.19784 4.35051 4.51651 4.80591 4.83481 4.97415 5.10237 5.38459 5.41544 5.58456 5.83964 6.10182 6.20999 6.27001 6.91752 7.12900 7.39161 8.48805 8.69611 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.046519 B = 0.010372 C = 0.008868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.762687 B = 2698.906479 C = 3156.772921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 H 0.096 0.904 4 C 0.517 3.483 5 O -0.591 6.591 6 N -0.703 5.703 7 C 0.097 3.903 8 C 0.095 3.905 9 N -0.647 5.647 10 C 0.544 3.456 11 O -0.610 6.610 12 C -0.564 4.564 13 H 0.101 0.899 14 C 0.031 3.969 15 N -0.823 5.823 16 Si 0.994 3.006 17 H -0.255 1.255 18 H -0.283 1.283 19 H -0.250 1.250 20 H 0.029 0.971 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.406 0.594 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 -2.387 -3.220 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.028 3.972 3 H 0.114 0.886 4 C 0.303 3.697 5 O -0.472 6.472 6 N -0.353 5.353 7 C -0.027 4.027 8 C -0.028 4.028 9 N -0.386 5.386 10 C 0.351 3.649 11 O -0.496 6.496 12 C -0.600 4.600 13 H 0.119 0.881 14 C -0.184 4.184 15 N -0.453 5.453 16 Si 0.814 3.186 17 H -0.179 1.179 18 H -0.208 1.208 19 H -0.174 1.174 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.243 0.757 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.132 0.868 27 H 0.099 0.901 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.677 -2.020 -3.498 11.416 hybrid contribution -0.119 -0.371 0.306 0.495 sum 10.559 -2.391 -3.193 11.287 Atomic orbital electron populations 1.21659 0.92314 1.01833 1.00010 1.21024 0.96575 0.96309 0.83317 0.88650 1.20526 0.78896 0.79915 0.90365 1.90670 1.58414 1.66862 1.31262 1.45265 1.38381 1.40042 1.11643 1.22018 1.00487 0.96944 0.83247 1.22136 0.81962 0.98180 1.00498 1.48380 1.12902 1.61998 1.15338 1.18658 0.84867 0.78376 0.83031 1.90599 1.18532 1.57172 1.83247 1.21444 0.95609 1.43000 0.99965 0.88139 1.26938 0.94468 0.94018 1.03001 1.70170 1.05307 1.36667 1.33160 0.85112 0.78293 0.79426 0.75775 1.17869 1.20807 1.17364 0.95196 0.93032 0.91603 0.75688 0.91992 0.84876 0.86774 0.90067 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.68 7.57 71.98 0.55 -4.13 15 2 C 0.14 5.53 3.68 44.06 0.16 5.69 15 3 H 0.10 3.59 8.14 -2.39 -0.02 3.57 15 4 C 0.52 19.19 7.35 87.79 0.65 19.84 15 5 O -0.59 -25.00 17.02 -3.01 -0.05 -25.05 15 6 N -0.70 -19.56 5.42 -467.09 -2.53 -22.09 15 7 C 0.10 2.26 7.34 86.54 0.63 2.89 15 8 C 0.10 2.83 6.43 86.23 0.55 3.38 15 9 N -0.65 -27.56 2.98 -804.27 -2.39 -29.95 15 10 C 0.54 29.50 7.47 86.36 0.64 30.15 15 11 O -0.61 -38.23 10.94 -4.32 -0.05 -38.28 15 12 C -0.56 -29.14 8.82 24.83 0.22 -28.92 15 13 H 0.10 4.43 5.84 -2.91 -0.02 4.41 15 14 C 0.03 1.62 5.50 85.30 0.47 2.09 15 15 N -0.82 -48.36 11.86 21.83 0.26 -48.10 15 16 Si 0.99 38.15 29.56 68.60 2.03 40.18 15 17 H -0.25 -9.19 7.11 99.48 0.71 -8.48 15 18 H -0.28 -10.85 7.11 99.48 0.71 -10.14 15 19 H -0.25 -8.80 7.11 99.48 0.71 -8.10 15 20 H 0.03 1.55 7.22 -2.38 -0.02 1.53 15 21 H 0.05 2.20 7.60 -2.39 -0.02 2.18 15 22 H 0.07 3.36 6.50 -2.39 -0.02 3.34 15 23 H 0.41 9.22 8.80 -92.71 -0.82 8.41 15 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.13 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.11 3.38 5.45 -2.39 -0.01 3.36 15 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.27 14.71 8.29 -92.71 -0.77 13.94 15 Total: -1.00 -74.52 235.52 1.51 -73.00 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.38 Total: 19.30 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 3.88 Total: 30.99 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.67 Total: -100.14 kcal Atomic # 8 Polarization: -63.23 SS G_CDS: -0.10 Total: -63.33 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -74.52 1.51 -73.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082476072.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.035 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds