Wall clock time and date at job start Sun Mar 29 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 C 1.38205 * 119.99664 * 264.72412 * 11 10 9 13 13 C 1.38432 * 119.99473 * 179.76905 * 12 11 10 14 14 F 1.35106 * 119.99999 * 180.27208 * 13 12 11 15 15 C 1.38472 * 120.00308 * 0.53097 * 13 12 11 16 16 C 1.38165 * 119.99635 * 359.72209 * 15 13 12 17 17 C 1.38420 * 120.00085 * 85.00081 * 11 10 9 18 18 F 1.35103 * 120.00346 * 359.97438 * 17 11 10 19 19 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 21 21 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 24 24 H 1.07999 * 120.00330 * 0.02562 * 12 11 10 25 25 H 1.08000 * 120.00156 * 179.70008 * 15 13 12 26 26 H 1.07995 * 119.99700 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 6 6.2185 -2.7471 -1.1946 13 6 7.6028 -2.7423 -1.1961 14 9 8.2774 -2.8448 -2.3622 15 6 8.2962 -2.6379 -0.0021 16 6 7.6063 -2.5327 1.1904 17 6 6.2216 -2.5317 1.1914 18 9 5.5471 -2.4288 2.3575 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 3.6584 -3.1503 0.8892 23 1 3.6578 -3.1506 -0.8907 24 1 5.6777 -2.8331 -2.1255 25 1 9.3762 -2.6390 -0.0029 26 1 8.1470 -2.4516 2.1217 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:33 Heat of formation + Delta-G solvation = -100.287333 kcal Electronic energy + Delta-G solvation = -13343.119651 eV Core-core repulsion = 10635.411484 eV Total energy + Delta-G solvation = -2707.708166 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.92004 -49.88811 -39.95554 -36.05067 -34.17348 -31.57244 -30.69707 -27.25203 -24.06341 -23.54552 -21.93562 -19.12790 -18.52436 -18.18359 -17.99721 -16.88371 -16.40449 -16.25041 -15.43640 -15.28980 -15.00993 -14.85779 -14.41992 -13.96146 -13.69088 -13.53702 -12.96014 -12.86215 -12.31529 -11.97318 -11.74846 -11.69652 -11.36251 -10.79620 -10.05183 -9.49318 -8.32413 -6.36970 -0.05235 0.07211 1.32802 1.35004 1.46865 2.33275 2.37856 3.02746 3.15277 3.25802 3.59669 3.73457 4.06363 4.17059 4.42898 4.58055 4.72780 4.94421 4.98302 5.02090 5.07844 5.11874 5.33720 5.51025 5.59720 5.82751 6.23294 6.70073 7.27775 8.84240 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.036973 B = 0.008248 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.134325 B = 3394.076042 C = 3617.072877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.534 4.534 8 H 0.037 0.963 9 C 0.000 4.000 10 C -0.064 4.064 11 C -0.091 4.091 12 C -0.132 4.132 13 C 0.084 3.916 14 F -0.139 7.139 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.067 3.933 18 F -0.145 7.145 19 H 0.268 0.732 20 H 0.013 0.987 21 H 0.021 0.979 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.149 0.851 25 H 0.179 0.821 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.126 -4.203 0.063 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.572 4.572 8 H 0.055 0.945 9 C -0.038 4.038 10 C -0.102 4.102 11 C -0.092 4.092 12 C -0.151 4.151 13 C 0.065 3.935 14 F -0.117 7.117 15 C -0.141 4.141 16 C -0.132 4.132 17 C 0.047 3.953 18 F -0.124 7.124 19 H 0.076 0.924 20 H 0.031 0.969 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.167 0.833 25 H 0.196 0.804 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 18.973 -4.101 0.062 19.412 hybrid contribution -0.581 0.645 -0.017 0.868 sum 18.392 -3.456 0.046 18.714 Atomic orbital electron populations 1.70053 1.08173 1.28238 1.52394 1.25952 0.95588 1.03333 0.94011 0.85721 0.79393 0.78579 0.79408 1.18750 1.20620 1.17638 1.21433 0.91667 0.93397 1.50689 0.94485 1.19434 0.94147 0.93724 0.96455 1.20398 0.88608 0.98456 1.02708 1.20037 0.97018 0.99934 0.92179 1.21036 0.92848 1.02388 0.98804 1.17768 0.89662 1.03894 0.82213 1.91501 1.80032 1.93661 1.46546 1.21262 1.02511 1.01097 0.89189 1.21266 0.90603 1.00390 1.00901 1.17961 0.91211 1.05133 0.80956 1.91483 1.80953 1.93626 1.46347 0.92356 0.96869 0.96025 0.91960 0.90483 0.83290 0.80383 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.00 13.96 21.45 0.30 -59.70 15 2 C 0.01 0.50 5.47 84.65 0.46 0.96 15 3 Si 0.95 45.01 27.47 68.60 1.88 46.89 15 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 6 H -0.25 -11.42 6.54 99.48 0.65 -10.76 15 7 C -0.53 -31.30 9.66 25.60 0.25 -31.05 15 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 15 9 C 0.00 -0.01 4.02 29.85 0.12 0.11 15 10 C -0.06 -2.57 5.06 29.85 0.15 -2.42 15 11 C -0.09 -2.98 5.14 -19.83 -0.10 -3.08 15 12 C -0.13 -3.72 9.66 22.31 0.22 -3.50 15 13 C 0.08 2.02 7.30 22.37 0.16 2.18 15 14 F -0.14 -3.32 17.27 44.97 0.78 -2.54 15 15 C -0.12 -2.34 10.02 22.31 0.22 -2.12 15 16 C -0.11 -2.42 10.02 22.31 0.22 -2.20 15 17 C 0.07 2.02 7.24 22.37 0.16 2.18 15 18 F -0.15 -5.00 16.57 44.97 0.74 -4.26 15 19 H 0.27 15.74 8.31 -92.71 -0.77 14.96 15 20 H 0.01 0.64 7.20 -2.39 -0.02 0.62 15 21 H 0.02 1.00 7.57 -2.39 -0.02 0.98 15 22 H 0.06 2.58 7.79 -2.39 -0.02 2.56 15 23 H 0.08 2.94 8.05 -2.39 -0.02 2.93 15 24 H 0.15 3.93 8.06 -2.91 -0.02 3.90 15 25 H 0.18 2.08 8.06 -2.91 -0.02 2.06 15 26 H 0.17 2.57 8.06 -2.91 -0.02 2.54 15 Total: -1.00 -66.59 240.69 6.70 -59.89 By element: Atomic # 1 Polarization: -2.47 SS G_CDS: 1.13 Total: -1.34 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 1.87 Total: -38.94 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.30 Total: -59.70 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 1.52 Total: -6.80 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -66.59 6.70 -59.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.395 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds