Wall clock time and date at job start Sun Mar 29 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47149 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.47021 * 60.00481 * 3 2 1 7 7 C 1.37880 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50690 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.38255 * 119.96710 * 270.02146 * 11 10 9 13 13 C 1.38211 * 120.07403 * 179.97438 * 12 11 10 14 14 C 1.38410 * 119.99989 * 359.97438 * 13 12 11 15 15 F 1.35103 * 120.03945 * 180.27720 * 14 13 12 16 16 C 1.38655 * 119.92833 * 0.02562 * 14 13 12 17 17 F 1.35100 * 120.03206 * 180.02562 * 16 14 13 18 18 C 1.38215 * 119.96717 * 90.00331 * 11 10 9 19 19 H 0.96994 * 119.99879 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46984 * 60.00403 * 9 7 2 21 21 H 1.09001 * 109.47353 * 300.00350 * 9 7 2 22 22 H 1.08996 * 109.47052 * 59.99627 * 10 9 7 23 23 H 1.09001 * 109.46908 * 300.00279 * 10 9 7 24 24 H 1.08000 * 119.96236 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.00028 * 180.02562 * 13 12 11 26 26 H 1.08003 * 119.99620 * 0.03958 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.1457 -5.5653 1.1963 13 6 0.4542 -6.7620 1.1983 14 6 0.1069 -7.3626 0.0006 15 9 -0.5740 -8.5295 0.0016 16 6 0.4540 -6.7627 -1.2003 17 9 0.1156 -7.3469 -2.3706 18 6 1.1471 -5.5647 -1.1988 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 2.8719 -3.6044 0.8894 23 1 2.8719 -3.6043 -0.8905 24 1 1.4160 -5.0970 2.1311 25 1 0.1841 -7.2280 2.1343 26 1 1.4183 -5.0966 -2.1336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082529661.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:29 Heat of formation + Delta-G solvation = -87.548495 kcal Electronic energy + Delta-G solvation = -13113.078664 eV Core-core repulsion = 10405.922895 eV Total energy + Delta-G solvation = -2707.155769 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.26377 -48.34408 -38.88132 -34.05708 -32.05369 -30.58709 -28.75887 -25.13049 -23.02752 -22.20808 -20.40162 -17.70211 -16.88661 -16.76855 -16.24204 -16.08141 -14.77625 -14.54181 -14.31657 -14.17494 -13.71305 -13.22857 -12.68295 -12.30125 -12.00801 -11.72936 -11.20920 -10.99135 -10.89642 -10.58815 -9.97708 -9.71848 -9.19061 -8.83173 -8.42235 -8.23077 -6.06749 -4.10482 1.16873 1.23403 3.27238 3.35175 3.38510 3.62341 3.99727 4.40426 4.52368 4.76469 5.04437 5.26964 5.29332 5.40560 5.91188 5.96576 6.11566 6.20110 6.29196 6.49170 6.77706 6.82470 7.04130 7.58128 7.68569 7.91593 8.31002 8.96502 9.54386 11.04265 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.060046 B = 0.006080 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.200464 B = 4603.898729 C = 4729.627897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.036 4.036 12 C -0.102 4.102 13 C -0.124 4.124 14 C 0.042 3.958 15 F -0.138 7.138 16 C 0.067 3.933 17 F -0.135 7.135 18 C -0.128 4.128 19 H 0.261 0.739 20 H 0.019 0.981 21 H 0.020 0.980 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -11.733 1.019 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.036 4.036 12 C -0.121 4.121 13 C -0.143 4.143 14 C 0.022 3.978 15 F -0.117 7.117 16 C 0.047 3.953 17 F -0.114 7.114 18 C -0.147 4.147 19 H 0.071 0.929 20 H 0.037 0.963 21 H 0.038 0.962 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.828 -11.685 0.969 11.867 hybrid contribution 0.081 0.619 -0.247 0.672 sum 1.909 -11.066 0.722 11.253 Atomic orbital electron populations 1.69975 1.06090 1.26666 1.50485 1.25027 0.94843 0.99334 0.95168 0.86524 0.80094 0.83682 0.77637 1.19680 1.20984 1.20974 1.21253 0.93126 0.90797 1.51069 0.92404 1.19117 0.93637 0.90392 0.97792 1.20921 0.98467 0.90385 1.02124 1.20362 0.95451 0.96366 0.91419 1.21076 0.97928 0.94063 0.98988 1.21024 1.00207 0.96790 0.96252 1.17608 1.01192 0.85337 0.93644 1.91478 1.77668 1.45199 1.97328 1.17699 1.02761 0.94724 0.80114 1.91491 1.90677 1.83721 1.45488 1.21060 0.99726 0.93403 1.00521 0.92932 0.96264 0.96199 0.91406 0.91594 0.84251 0.84167 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.67 4.95 -27.88 -0.14 0.54 15 10 C -0.08 -1.53 5.28 -27.89 -0.15 -1.68 15 11 C -0.04 -0.59 5.13 -104.63 -0.54 -1.13 15 12 C -0.10 -1.49 9.70 -39.59 -0.38 -1.87 15 13 C -0.12 -1.68 10.02 -39.53 -0.40 -2.07 15 14 C 0.04 0.64 7.31 -39.36 -0.29 0.35 15 15 F -0.14 -2.12 17.18 2.25 0.04 -2.08 15 16 C 0.07 1.07 7.31 -39.37 -0.29 0.78 15 17 F -0.14 -2.20 17.18 2.25 0.04 -2.16 15 18 C -0.13 -2.06 9.68 -39.53 -0.38 -2.44 15 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 20 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.07 1.20 8.09 -51.93 -0.42 0.78 15 23 H 0.07 1.19 8.08 -51.93 -0.42 0.77 15 24 H 0.14 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 26 H 0.14 2.16 8.06 -52.48 -0.42 1.74 15 LS Contribution 245.14 15.07 3.69 3.69 Total: -1.00 -29.01 245.14 -5.98 -34.99 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: -2.49 Total: -4.43 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.97 Total: -20.51 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.08 Total: -4.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.01 -5.98 -34.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529661.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.562 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds