Wall clock time and date at job start Sun Mar 29 2020 21:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48500 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47149 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.47021 * 60.00481 * 3 2 1 7 7 C 1.37880 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50690 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.38255 * 119.96710 * 270.02146 * 11 10 9 13 13 C 1.38211 * 120.07403 * 179.97438 * 12 11 10 14 14 C 1.38410 * 119.99989 * 359.97438 * 13 12 11 15 15 F 1.35103 * 120.03945 * 180.27720 * 14 13 12 16 16 C 1.38655 * 119.92833 * 0.02562 * 14 13 12 17 17 F 1.35100 * 120.03206 * 180.02562 * 16 14 13 18 18 C 1.38215 * 119.96717 * 90.00331 * 11 10 9 19 19 H 0.96994 * 119.99879 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46984 * 60.00403 * 9 7 2 21 21 H 1.09001 * 109.47353 * 300.00350 * 9 7 2 22 22 H 1.08996 * 109.47052 * 59.99627 * 10 9 7 23 23 H 1.09001 * 109.46908 * 300.00279 * 10 9 7 24 24 H 1.08000 * 119.96236 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.00028 * 180.02562 * 13 12 11 26 26 H 1.08003 * 119.99620 * 0.03958 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.1457 -5.5653 1.1963 13 6 0.4542 -6.7620 1.1983 14 6 0.1069 -7.3626 0.0006 15 9 -0.5740 -8.5295 0.0016 16 6 0.4540 -6.7627 -1.2003 17 9 0.1156 -7.3469 -2.3706 18 6 1.1471 -5.5647 -1.1988 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 2.8719 -3.6044 0.8894 23 1 2.8719 -3.6043 -0.8905 24 1 1.4160 -5.0970 2.1311 25 1 0.1841 -7.2280 2.1343 26 1 1.4183 -5.0966 -2.1336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529661.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:29 Heat of formation + Delta-G solvation = -102.557176 kcal Electronic energy + Delta-G solvation = -13113.729489 eV Core-core repulsion = 10405.922895 eV Total energy + Delta-G solvation = -2707.806594 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.49543 -49.57766 -40.11930 -35.85762 -33.82446 -31.79340 -30.37838 -26.90103 -24.24784 -23.81288 -21.92913 -18.94593 -18.52914 -18.11697 -17.78216 -17.32707 -16.49903 -16.01274 -15.56712 -15.41838 -15.00047 -14.72843 -14.42932 -13.78699 -13.60942 -13.26943 -12.83537 -12.61557 -12.41054 -12.18417 -11.72697 -11.54715 -11.17035 -10.54223 -10.02506 -9.53264 -8.17962 -6.29040 -0.06552 0.05477 1.42721 1.43946 1.56314 2.38428 2.45808 2.80214 3.16226 3.30959 3.59899 3.80250 4.11131 4.21332 4.56347 4.79709 4.83062 4.87094 4.96700 5.07933 5.20040 5.41696 5.53831 5.79203 5.79829 5.87072 6.24374 6.88877 7.40792 8.93704 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.060046 B = 0.006080 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.200464 B = 4603.898729 C = 4729.627897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.031 3.969 10 C -0.067 4.067 11 C -0.053 4.053 12 C -0.098 4.098 13 C -0.110 4.110 14 C 0.039 3.961 15 F -0.138 7.138 16 C 0.053 3.947 17 F -0.140 7.140 18 C -0.133 4.133 19 H 0.262 0.738 20 H -0.011 1.011 21 H -0.002 1.002 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.160 0.840 25 H 0.176 0.824 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -12.011 1.932 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.006 4.006 10 C -0.105 4.105 11 C -0.053 4.053 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.019 3.981 15 F -0.117 7.117 16 C 0.033 3.967 17 F -0.119 7.119 18 C -0.152 4.152 19 H 0.071 0.929 20 H 0.008 0.992 21 H 0.016 0.984 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.177 0.823 25 H 0.193 0.807 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.817 -11.979 1.880 12.449 hybrid contribution -0.257 0.642 -0.525 0.868 sum 2.561 -11.337 1.355 11.702 Atomic orbital electron populations 1.70108 1.07850 1.27653 1.51851 1.25954 0.95665 1.03310 0.94850 0.85427 0.79275 0.78958 0.77560 1.18284 1.20831 1.20551 1.21745 0.93796 0.92041 1.50205 0.91567 1.18979 0.94122 0.92230 0.95244 1.20640 0.97332 0.89426 1.03053 1.20213 0.96642 0.95960 0.92523 1.21328 0.97083 0.94173 0.98975 1.21338 0.98601 0.95963 0.96975 1.17824 1.00964 0.85307 0.93960 1.91480 1.77663 1.45229 1.97345 1.17817 1.03494 0.95019 0.80397 1.91473 1.90796 1.83778 1.45874 1.21100 0.99804 0.93570 1.00709 0.92871 0.99212 0.98380 0.90019 0.91142 0.82268 0.80656 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.45 0.28 -55.41 15 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 15 3 Si 0.96 42.91 29.54 68.60 2.03 44.93 15 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 7 C -0.54 -29.16 9.11 25.60 0.23 -28.93 15 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.03 1.55 4.95 29.85 0.15 1.70 15 10 C -0.07 -2.47 5.28 29.84 0.16 -2.32 15 11 C -0.05 -1.70 5.13 -19.87 -0.10 -1.80 15 12 C -0.10 -2.61 9.70 22.27 0.22 -2.39 15 13 C -0.11 -2.66 10.02 22.30 0.22 -2.44 15 14 C 0.04 1.13 7.31 22.41 0.16 1.29 15 15 F -0.14 -3.99 17.18 44.97 0.77 -3.22 15 16 C 0.05 1.64 7.31 22.41 0.16 1.81 15 17 F -0.14 -4.52 17.18 44.97 0.77 -3.75 15 18 C -0.13 -4.21 9.68 22.30 0.22 -3.99 15 19 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 20 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 15 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 22 H 0.08 2.75 8.09 -2.39 -0.02 2.73 15 23 H 0.07 2.49 8.08 -2.39 -0.02 2.47 15 24 H 0.16 3.61 8.06 -2.91 -0.02 3.58 15 25 H 0.18 2.98 8.06 -2.91 -0.02 2.96 15 26 H 0.15 4.42 8.06 -2.91 -0.02 4.40 15 Total: -1.00 -61.65 245.14 6.92 -54.73 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: 1.18 Total: -0.67 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 1.88 Total: -36.61 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.28 Total: -55.41 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 1.55 Total: -6.97 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -61.65 6.92 -54.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529661.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -61.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds