Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99568 * 2 1 4 4 H 1.48496 * 109.47189 * 269.99867 * 3 2 1 5 5 H 1.48493 * 109.47331 * 30.00072 * 3 2 1 6 6 H 1.48505 * 109.47056 * 150.00154 * 3 2 1 7 7 C 1.37870 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00387 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47493 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47462 * 180.02562 * 10 9 7 12 12 C 1.38238 * 119.98747 * 265.23450 * 11 10 9 13 13 C 1.38182 * 120.04926 * 180.23109 * 12 11 10 14 14 C 1.38497 * 120.02770 * 359.78734 * 13 12 11 15 15 F 1.35103 * 120.01374 * 180.02562 * 14 13 12 16 16 C 1.38397 * 119.97392 * 359.97438 * 14 13 12 17 17 C 1.38438 * 119.94948 * 0.02562 * 16 14 13 18 18 F 1.35104 * 120.01364 * 179.97438 * 17 16 14 19 19 H 0.96997 * 120.00182 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46785 * 60.00264 * 9 7 2 21 21 H 1.08993 * 109.47111 * 300.00333 * 9 7 2 22 22 H 1.08998 * 109.46960 * 59.99807 * 10 9 7 23 23 H 1.09007 * 109.47243 * 300.00323 * 10 9 7 24 24 H 1.08004 * 119.97328 * 359.97167 * 12 11 10 25 25 H 1.08004 * 119.98465 * 179.76793 * 13 12 11 26 26 H 1.07995 * 120.02726 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5286 -2.6363 0.0001 12 6 6.2196 -2.7359 -1.1930 13 6 7.6014 -2.7408 -1.1941 14 6 8.2957 -2.6415 0.0002 15 9 9.6467 -2.6458 -0.0012 16 6 7.6050 -2.5368 1.1949 17 6 6.2207 -2.5320 1.1948 18 9 5.5451 -2.4304 2.3603 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6795 0.8895 21 1 3.8745 -0.6807 -0.8904 22 1 3.6580 -3.1504 -0.8896 23 1 3.6587 -3.1501 0.8903 24 1 5.6790 -2.8141 -2.1247 25 1 8.1402 -2.8224 -2.1266 26 1 8.1456 -2.4590 2.1266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082529662.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = -82.903503 kcal Electronic energy + Delta-G solvation = -13313.221355 eV Core-core repulsion = 10606.267008 eV Total energy + Delta-G solvation = -2706.954347 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.95643 -48.70247 -38.82298 -34.20133 -32.12832 -30.72455 -29.15417 -25.25722 -23.05468 -22.03593 -20.29792 -18.06584 -17.05479 -16.90173 -15.83821 -15.71485 -15.14384 -15.00525 -14.31476 -14.20710 -13.79386 -13.20375 -12.75909 -12.48240 -12.05510 -11.86146 -11.46405 -11.18462 -10.96415 -10.24761 -9.96618 -9.77307 -9.24589 -8.96224 -8.56585 -8.31719 -6.07192 -4.05981 1.09664 1.10948 3.29285 3.37232 3.41884 3.49237 3.98523 4.43265 4.56422 4.69354 4.86653 5.04383 5.26750 5.27813 5.83768 5.87046 6.01682 6.09744 6.17172 6.33996 6.52480 6.67605 6.93304 7.20014 7.33811 7.73744 8.48883 8.96712 9.54911 11.06038 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.044871 B = 0.007585 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.859580 B = 3690.468633 C = 3748.486721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.071 4.071 11 C -0.105 4.105 12 C -0.066 4.066 13 C -0.162 4.162 14 C 0.107 3.893 15 F -0.139 7.139 16 C -0.192 4.192 17 C 0.127 3.873 18 F -0.126 7.126 19 H 0.264 0.736 20 H 0.018 0.982 21 H 0.014 0.986 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.144 0.856 25 H 0.138 0.862 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.341 -5.030 -0.932 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.044 4.044 10 C -0.108 4.108 11 C -0.106 4.106 12 C -0.084 4.084 13 C -0.181 4.181 14 C 0.088 3.912 15 F -0.118 7.118 16 C -0.212 4.212 17 C 0.108 3.892 18 F -0.104 7.104 19 H 0.073 0.927 20 H 0.036 0.964 21 H 0.032 0.968 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.162 0.838 25 H 0.156 0.844 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.203 -4.907 -0.877 15.999 hybrid contribution 0.541 1.000 0.259 1.166 sum 15.744 -3.907 -0.617 16.234 Atomic orbital electron populations 1.69905 1.06272 1.26957 1.50935 1.24993 0.94711 0.99118 0.94447 0.86813 0.80474 0.83706 0.78574 1.20197 1.21261 1.18995 1.21086 0.89127 0.94621 1.51147 0.90825 1.19559 0.97265 0.90902 0.96636 1.20634 0.86081 1.01110 1.02988 1.20604 0.99164 0.99439 0.91406 1.20884 0.92634 0.96817 0.98024 1.21158 0.94982 1.04918 0.97085 1.17226 0.76723 1.03354 0.93915 1.91491 1.28852 1.94069 1.97377 1.20963 0.93260 1.08156 0.98818 1.17228 0.88763 1.01308 0.81926 1.91539 1.80023 1.93072 1.45761 0.92663 0.96399 0.96772 0.90769 0.90971 0.83833 0.84411 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 15 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.09 15 8 H 0.07 2.21 7.99 -52.48 -0.42 1.80 15 9 C -0.01 -0.15 4.02 -27.88 -0.11 -0.26 15 10 C -0.07 -1.37 5.05 -27.89 -0.14 -1.51 15 11 C -0.11 -1.73 5.14 -104.55 -0.54 -2.27 15 12 C -0.07 -0.89 9.68 -39.60 -0.38 -1.28 15 13 C -0.16 -2.00 10.02 -39.51 -0.40 -2.39 15 14 C 0.11 1.42 7.30 -39.43 -0.29 1.13 15 15 F -0.14 -1.81 17.27 2.25 0.04 -1.77 15 16 C -0.19 -2.67 10.01 -39.45 -0.39 -3.07 15 17 C 0.13 2.07 7.24 -39.43 -0.29 1.78 15 18 F -0.13 -2.23 16.56 2.25 0.04 -2.19 15 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 20 H 0.02 0.44 7.20 -51.93 -0.37 0.06 15 21 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 15 22 H 0.07 1.34 8.05 -51.93 -0.42 0.92 15 23 H 0.07 1.42 7.79 -51.93 -0.40 1.02 15 24 H 0.14 1.68 8.06 -52.48 -0.42 1.26 15 25 H 0.14 1.32 8.06 -52.48 -0.42 0.90 15 26 H 0.14 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 240.69 15.07 3.63 3.63 Total: -1.00 -30.20 240.69 -5.60 -35.80 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: -2.44 Total: -4.59 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.97 Total: -21.05 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.20 -5.60 -35.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529662.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.103 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds