Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99568 * 2 1 4 4 H 1.48496 * 109.47189 * 269.99867 * 3 2 1 5 5 H 1.48493 * 109.47331 * 30.00072 * 3 2 1 6 6 H 1.48505 * 109.47056 * 150.00154 * 3 2 1 7 7 C 1.37870 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00387 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47493 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47462 * 180.02562 * 10 9 7 12 12 C 1.38238 * 119.98747 * 265.23450 * 11 10 9 13 13 C 1.38182 * 120.04926 * 180.23109 * 12 11 10 14 14 C 1.38497 * 120.02770 * 359.78734 * 13 12 11 15 15 F 1.35103 * 120.01374 * 180.02562 * 14 13 12 16 16 C 1.38397 * 119.97392 * 359.97438 * 14 13 12 17 17 C 1.38438 * 119.94948 * 0.02562 * 16 14 13 18 18 F 1.35104 * 120.01364 * 179.97438 * 17 16 14 19 19 H 0.96997 * 120.00182 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46785 * 60.00264 * 9 7 2 21 21 H 1.08993 * 109.47111 * 300.00333 * 9 7 2 22 22 H 1.08998 * 109.46960 * 59.99807 * 10 9 7 23 23 H 1.09007 * 109.47243 * 300.00323 * 10 9 7 24 24 H 1.08004 * 119.97328 * 359.97167 * 12 11 10 25 25 H 1.08004 * 119.98465 * 179.76793 * 13 12 11 26 26 H 1.07995 * 120.02726 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5286 -2.6363 0.0001 12 6 6.2196 -2.7359 -1.1930 13 6 7.6014 -2.7408 -1.1941 14 6 8.2957 -2.6415 0.0002 15 9 9.6467 -2.6458 -0.0012 16 6 7.6050 -2.5368 1.1949 17 6 6.2207 -2.5320 1.1948 18 9 5.5451 -2.4304 2.3603 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6795 0.8895 21 1 3.8745 -0.6807 -0.8904 22 1 3.6580 -3.1504 -0.8896 23 1 3.6587 -3.1501 0.8903 24 1 5.6790 -2.8141 -2.1247 25 1 8.1402 -2.8224 -2.1266 26 1 8.1456 -2.4590 2.1266 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529662.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = -99.948065 kcal Electronic energy + Delta-G solvation = -13313.960462 eV Core-core repulsion = 10606.267008 eV Total energy + Delta-G solvation = -2707.693455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.99044 -49.96983 -39.96218 -35.96363 -34.03888 -31.82190 -30.74347 -26.95955 -24.14893 -23.56493 -21.89934 -19.21377 -18.98543 -18.20547 -16.99405 -16.81437 -16.42943 -16.25077 -16.21209 -15.42789 -14.99946 -14.84742 -14.64284 -13.77739 -13.68370 -13.28330 -12.90272 -12.67629 -12.40211 -11.96200 -11.76994 -11.67051 -11.35980 -10.77620 -10.03891 -9.52734 -8.30648 -6.34911 -0.02905 0.03864 1.33832 1.36749 1.48218 2.34752 2.39089 2.89057 3.04751 3.46277 3.64137 3.74135 3.94592 4.17927 4.50546 4.63842 4.80614 4.83787 4.94949 5.05654 5.07437 5.23546 5.38594 5.55987 5.62477 5.81804 6.25618 6.72591 7.29910 8.85985 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.044871 B = 0.007585 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.859580 B = 3690.468633 C = 3748.486721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.002 4.002 10 C -0.062 4.062 11 C -0.126 4.126 12 C -0.060 4.060 13 C -0.147 4.147 14 C 0.110 3.890 15 F -0.135 7.135 16 C -0.189 4.189 17 C 0.105 3.895 18 F -0.143 7.143 19 H 0.267 0.733 20 H 0.008 0.992 21 H 0.026 0.974 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.165 0.835 25 H 0.173 0.827 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.005 -4.439 -2.035 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.039 4.039 10 C -0.099 4.099 11 C -0.127 4.127 12 C -0.078 4.078 13 C -0.165 4.165 14 C 0.091 3.909 15 F -0.113 7.113 16 C -0.209 4.209 17 C 0.085 3.915 18 F -0.122 7.122 19 H 0.076 0.924 20 H 0.027 0.973 21 H 0.044 0.956 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.183 0.817 25 H 0.191 0.809 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 17.885 -4.332 -1.983 18.509 hybrid contribution -0.262 0.717 0.591 0.965 sum 17.623 -3.616 -1.392 18.044 Atomic orbital electron populations 1.70054 1.08187 1.28185 1.52544 1.25950 0.95563 1.03325 0.94097 0.85719 0.79260 0.78598 0.79489 1.18446 1.20906 1.17866 1.21453 0.91774 0.93340 1.50470 0.94471 1.19456 0.94022 0.93977 0.96454 1.20367 0.88676 0.98200 1.02706 1.20404 0.97255 1.02133 0.92864 1.21114 0.93360 0.95663 0.97638 1.21484 0.94355 1.02570 0.98116 1.17343 0.76913 1.02603 0.94037 1.91513 1.28516 1.93934 1.97356 1.21092 0.92288 1.07361 1.00138 1.17469 0.89724 1.02897 0.81386 1.91491 1.80537 1.93450 1.46688 0.92419 0.97327 0.95589 0.89899 0.92597 0.81713 0.80938 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.44 0.30 -59.39 15 2 C 0.01 0.45 5.47 84.65 0.46 0.92 15 3 Si 0.95 44.64 27.47 68.60 1.88 46.53 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 6 H -0.25 -11.49 6.54 99.48 0.65 -10.84 15 7 C -0.53 -30.79 9.66 25.60 0.25 -30.54 15 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 15 9 C 0.00 -0.08 4.02 29.85 0.12 0.04 15 10 C -0.06 -2.40 5.05 29.85 0.15 -2.24 15 11 C -0.13 -3.95 5.14 -19.81 -0.10 -4.06 15 12 C -0.06 -1.44 9.68 22.26 0.22 -1.22 15 13 C -0.15 -2.97 10.02 22.32 0.22 -2.75 15 14 C 0.11 2.53 7.30 22.37 0.16 2.70 15 15 F -0.13 -2.99 17.27 44.97 0.78 -2.21 15 16 C -0.19 -4.83 10.01 22.36 0.22 -4.61 15 17 C 0.10 3.28 7.24 22.37 0.16 3.45 15 18 F -0.14 -5.11 16.56 44.97 0.74 -4.37 15 19 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 20 H 0.01 0.41 7.20 -2.39 -0.02 0.39 15 21 H 0.03 1.16 7.57 -2.39 -0.02 1.14 15 22 H 0.08 2.97 8.05 -2.39 -0.02 2.95 15 23 H 0.06 2.28 7.79 -2.38 -0.02 2.26 15 24 H 0.17 3.22 8.06 -2.91 -0.02 3.20 15 25 H 0.17 2.33 8.06 -2.91 -0.02 2.30 15 26 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 Total: -1.00 -65.73 240.69 6.70 -59.03 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: 1.13 Total: -1.27 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 1.87 Total: -38.32 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.30 Total: -59.39 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.52 Total: -6.58 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -65.73 6.70 -59.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529662.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.914 kcal (2) G-P(sol) polarization free energy of solvation -65.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds