Wall clock time and date at job start Sun Mar 29 2020 21:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31781 * 122.74547 * 2 1 4 4 C 1.29029 * 117.12396 * 179.73344 * 3 2 1 5 5 S 1.70978 * 110.16517 * 0.02562 * 4 3 2 6 6 C 1.33638 * 122.74913 * 179.71704 * 2 1 3 7 7 C 1.50696 * 126.03960 * 0.24348 * 6 2 1 8 8 N 1.46492 * 109.47185 * 90.00494 * 7 6 2 9 9 C 1.46503 * 120.00115 * 269.99974 * 8 7 6 10 10 C 1.36942 * 120.00396 * 90.00096 * 8 7 6 11 11 H 1.07999 * 119.99388 * 22.11961 * 10 8 7 12 12 C 1.38808 * 119.99984 * 202.12604 * 10 8 7 13 13 N 1.31614 * 120.00517 * 11.26487 * 12 10 8 14 14 Si 1.86806 * 119.99802 * 191.26025 * 12 10 8 15 15 H 1.48500 * 109.46867 * 89.99963 * 14 12 10 16 16 H 1.48490 * 109.47328 * 210.00034 * 14 12 10 17 17 H 1.48498 * 109.47018 * 330.00527 * 14 12 10 18 18 H 1.09003 * 109.47292 * 90.02176 * 1 2 3 19 19 H 1.09001 * 109.46816 * 210.02068 * 1 2 3 20 20 H 1.08998 * 109.46999 * 330.01736 * 1 2 3 21 21 H 1.07994 * 124.91785 * 180.02562 * 4 3 2 22 22 H 1.09005 * 109.47244 * 210.00953 * 7 6 2 23 23 H 1.09001 * 109.47233 * 330.00300 * 7 6 2 24 24 H 1.08998 * 109.47184 * 94.53861 * 9 8 7 25 25 H 1.08998 * 109.47596 * 214.53685 * 9 8 7 26 26 H 1.09004 * 109.46648 * 334.53750 * 9 8 7 27 27 H 0.96996 * 120.00766 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0053 5 16 3.9333 -0.6730 0.0105 6 6 2.2300 -1.1239 0.0056 7 6 1.6848 -2.5288 0.0073 8 7 1.5131 -2.9877 -1.3732 9 6 0.2445 -2.7582 -2.0691 10 6 2.5385 -3.6313 -2.0134 11 1 3.3140 -4.1160 -1.4389 12 6 2.5810 -3.6606 -3.4005 13 7 1.7727 -2.8928 -4.1001 14 14 3.7856 -4.7898 -4.2744 15 1 3.1442 -6.1075 -4.5138 16 1 4.1766 -4.1862 -5.5735 17 1 4.9934 -4.9733 -3.4302 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8901 0.5136 21 1 4.2059 1.8027 0.0064 22 1 2.3811 -3.1882 0.5255 23 1 0.7217 -2.5442 0.5177 24 1 0.3102 -1.8386 -2.6505 25 1 0.0391 -3.5956 -2.7359 26 1 -0.5597 -2.6697 -1.3386 27 1 1.8027 -2.9130 -5.0694 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082618985.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:04 Heat of formation + Delta-G solvation = 45.209163 kcal Electronic energy + Delta-G solvation = -12215.747783 eV Core-core repulsion = 10100.481956 eV Total energy + Delta-G solvation = -2115.265827 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62766 -37.55220 -34.00739 -32.28559 -29.85943 -27.87816 -26.50602 -25.23657 -22.98668 -19.76160 -18.88450 -18.59376 -16.97925 -16.38516 -15.89998 -15.28602 -14.93818 -14.61532 -14.31931 -13.58626 -13.47173 -13.24428 -13.02460 -12.82739 -12.50727 -12.39743 -12.03081 -12.00349 -11.67191 -10.70690 -10.49227 -10.04683 -9.49308 -8.86951 -7.86258 -5.33470 -0.02151 0.68998 1.05910 1.46332 1.46827 1.55332 1.97797 2.49635 3.30106 3.50667 3.76847 4.26412 4.32689 4.45589 4.58680 4.76270 4.85075 4.91093 4.99368 5.16978 5.33441 5.50072 5.61158 5.73702 6.27803 6.91478 7.10732 7.80130 8.23622 9.16287 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.011500 C = 0.009931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.135327 B = 2434.179767 C = 2818.686888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.022 3.978 3 N -0.495 5.495 4 C -0.004 4.004 5 S 0.113 5.887 6 C -0.218 4.218 7 C 0.214 3.786 8 N -0.600 5.600 9 C 0.180 3.820 10 C -0.258 4.258 11 H 0.074 0.926 12 C -0.049 4.049 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.284 1.284 16 H -0.298 1.298 17 H -0.266 1.266 18 H 0.058 0.942 19 H 0.085 0.915 20 H 0.078 0.922 21 H 0.225 0.775 22 H 0.063 0.937 23 H 0.088 0.912 24 H -0.002 1.002 25 H 0.020 0.980 26 H 0.037 0.963 27 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.242 3.448 8.995 9.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.210 5.210 4 C -0.301 4.301 5 S 0.366 5.634 6 C -0.342 4.342 7 C 0.085 3.915 8 N -0.321 5.321 9 C 0.036 3.964 10 C -0.389 4.389 11 H 0.092 0.908 12 C -0.244 4.244 13 N -0.580 5.580 14 Si 0.794 3.206 15 H -0.210 1.210 16 H -0.225 1.225 17 H -0.191 1.191 18 H 0.077 0.923 19 H 0.104 0.896 20 H 0.097 0.903 21 H 0.241 0.759 22 H 0.081 0.919 23 H 0.106 0.894 24 H 0.017 0.983 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.951 3.454 8.822 9.673 hybrid contribution -0.139 -0.199 -1.129 1.155 sum 1.811 3.256 7.692 8.547 Atomic orbital electron populations 1.20275 0.86399 1.03501 1.02165 1.20431 0.99088 0.86365 1.05097 1.66130 1.06086 1.32282 1.16454 1.28621 0.95232 1.00810 1.05466 1.83794 1.08687 1.03435 1.67492 1.27326 0.94947 1.03398 1.08541 1.19621 0.99360 0.85865 0.86620 1.44377 1.11955 1.64302 1.11431 1.20583 0.84581 0.98060 0.93226 1.19538 1.04520 1.25393 0.89420 0.90804 1.25801 1.00619 1.00337 0.97687 1.70245 1.41770 1.40756 1.05268 0.85287 0.79248 0.78405 0.77694 1.21023 1.22474 1.19080 0.92331 0.89638 0.90276 0.75871 0.91865 0.89362 0.98337 0.96124 0.94495 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 10.06 71.24 0.72 -1.34 15 2 C 0.02 0.83 6.74 41.52 0.28 1.11 15 3 N -0.49 -18.56 10.53 -191.55 -2.02 -20.58 15 4 C 0.00 -0.12 12.23 130.65 1.60 1.48 15 5 S 0.11 3.95 23.22 -56.49 -1.31 2.64 15 6 C -0.22 -8.49 6.17 24.64 0.15 -8.34 15 7 C 0.21 8.38 5.92 85.63 0.51 8.89 15 8 N -0.60 -29.04 2.91 -731.32 -2.13 -31.17 15 9 C 0.18 8.68 9.01 127.77 1.15 9.83 15 10 C -0.26 -13.73 9.68 84.03 0.81 -12.91 15 11 H 0.07 3.80 7.84 -2.91 -0.02 3.78 15 12 C -0.05 -2.69 5.13 84.86 0.44 -2.26 15 13 N -0.93 -54.97 10.57 21.65 0.23 -54.75 15 14 Si 0.97 44.51 29.57 68.60 2.03 46.54 15 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 16 H -0.30 -14.00 7.11 99.48 0.71 -13.29 15 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 18 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 19 H 0.08 2.39 6.71 -2.39 -0.02 2.38 15 20 H 0.08 2.22 8.14 -2.39 -0.02 2.21 15 21 H 0.23 5.18 8.06 -2.91 -0.02 5.15 15 22 H 0.06 2.37 8.03 -2.38 -0.02 2.35 15 23 H 0.09 2.97 6.47 -2.39 -0.02 2.95 15 24 H 0.00 -0.09 7.40 -2.39 -0.02 -0.11 15 25 H 0.02 1.07 7.19 -2.39 -0.02 1.05 15 26 H 0.04 1.46 7.84 -2.38 -0.02 1.45 15 27 H 0.25 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -64.11 247.21 3.61 -60.50 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: 1.16 Total: 0.36 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.65 Total: -3.54 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.92 Total: -106.49 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -64.11 3.61 -60.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618985.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.708 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds