Wall clock time and date at job start Sun Mar 29 2020 21:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 N 1.46901 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.46900 * 110.99890 * 204.99887 * 6 5 4 8 8 C 1.50698 * 109.47212 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99807 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00538 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99821 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46887 * 59.99940 * 12 10 8 14 14 H 1.48497 * 109.47143 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47352 * 300.00237 * 12 10 8 16 16 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 17 17 C 1.52997 * 109.46817 * 60.00194 * 16 5 4 18 18 H 1.09002 * 109.47153 * 60.00231 * 17 16 5 19 19 C 1.53002 * 109.47143 * 180.02562 * 17 16 5 20 20 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 25 25 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 26 26 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 27 27 H 1.00898 * 111.00476 * 81.04496 * 6 5 4 28 28 H 1.09005 * 109.46934 * 299.99673 * 7 6 5 29 29 H 1.09002 * 109.47391 * 59.99776 * 7 6 5 30 30 H 0.97002 * 120.00684 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47662 * 180.02562 * 16 5 4 32 32 H 1.09002 * 109.47075 * 300.00932 * 16 5 4 33 33 H 1.09002 * 109.47067 * 59.99982 * 19 17 16 34 34 H 1.09000 * 109.47312 * 180.02562 * 19 17 16 35 35 H 1.09004 * 109.46930 * 300.00065 * 19 17 16 36 36 H 1.09000 * 109.47486 * 299.99829 * 20 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 7 2.0202 -2.8566 -2.4480 7 6 1.1366 -3.9733 -2.8090 8 6 1.6707 -4.6587 -4.0403 9 1 2.5757 -4.3004 -4.5082 10 6 1.0039 -5.7433 -4.5695 11 7 -0.0979 -6.1801 -3.9995 12 14 1.6655 -6.5925 -6.0962 13 1 3.0307 -7.1090 -5.8229 14 1 0.7731 -7.7222 -6.4603 15 1 1.7191 -5.6218 -7.2186 16 6 2.0399 -2.8851 0.0003 17 6 1.5299 -2.1637 1.2495 18 1 0.4399 -2.1636 1.2494 19 6 2.0404 -2.8844 2.4988 20 6 2.0399 -0.7211 1.2494 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 3.1301 -0.7218 -1.2489 25 1 1.6767 -0.2076 -2.1392 26 1 0.4400 -2.1638 -1.2490 27 1 2.9695 -3.1736 -2.3199 28 1 1.0969 -4.6861 -1.9853 29 1 0.1347 -3.5938 -3.0097 30 1 -0.5668 -6.9434 -4.3716 31 1 1.6770 -3.9128 0.0003 32 1 3.1299 -2.8850 0.0004 33 1 3.1304 -2.8841 2.4986 34 1 1.6767 -2.3708 3.3887 35 1 1.6774 -3.9123 2.4991 36 1 1.6766 -0.2072 2.1393 37 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082829629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:22 Heat of formation + Delta-G solvation = -37.566936 kcal Electronic energy + Delta-G solvation = -14568.060191 eV Core-core repulsion = 12343.544152 eV Total energy + Delta-G solvation = -2224.516039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24897 -34.84336 -32.95699 -32.42297 -29.20043 -26.62490 -26.18797 -25.69122 -22.01079 -21.22088 -20.33327 -18.46375 -16.39159 -15.18549 -14.96865 -14.61818 -14.04075 -13.87358 -13.57182 -13.10474 -12.69172 -12.45428 -12.12630 -11.90531 -11.61607 -11.47328 -11.26210 -11.05055 -10.78827 -10.74446 -10.65371 -10.48316 -10.22807 -9.93094 -9.82739 -9.53015 -9.09519 -8.44619 -7.16998 -5.99916 -4.01712 3.35412 3.39001 3.42388 4.45397 4.84861 4.88687 4.97566 5.29652 5.35669 5.37501 5.45307 5.52579 5.66398 5.78253 5.82832 5.84726 5.94014 5.96385 6.05599 6.13423 6.15228 6.24329 6.28717 6.44961 6.49503 6.52614 6.62043 6.78787 6.83944 7.33427 7.50324 7.83207 8.18482 8.47532 8.69396 9.07962 9.63031 11.11059 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045725 B = 0.006687 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.203533 B = 4186.374456 C = 4409.420992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.064 0.936 4 C -0.100 4.100 5 C 0.086 3.914 6 N -0.687 5.687 7 C 0.195 3.805 8 C -0.514 4.514 9 H 0.061 0.939 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.899 3.101 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.141 4.141 17 C -0.091 4.091 18 H 0.070 0.930 19 C -0.146 4.146 20 C -0.106 4.106 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.327 0.673 28 H -0.014 1.014 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 9.616 10.820 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.138 4.138 5 C -0.025 4.025 6 N -0.315 5.315 7 C 0.069 3.931 8 C -0.553 4.553 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.180 4.180 17 C -0.110 4.110 18 H 0.089 0.911 19 C -0.204 4.204 20 C -0.143 4.143 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.144 0.856 28 H 0.004 0.996 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.596 9.901 10.331 14.543 hybrid contribution 0.468 -1.269 -0.106 1.357 sum 3.064 8.632 10.225 13.728 Atomic orbital electron populations 1.21935 0.95567 1.02302 1.00944 1.21107 0.95869 0.98650 0.95364 0.91807 1.21536 1.00066 0.95685 0.96543 1.21560 0.99432 0.93117 0.88373 1.60752 1.06098 1.32056 1.32632 1.19547 0.92463 0.86327 0.94797 1.21186 1.10249 1.12657 1.11222 0.92096 1.24988 0.95003 0.97062 0.97516 1.69952 1.17305 1.25938 1.40627 0.86557 0.78642 0.78912 0.83250 1.20305 1.21360 1.20167 1.22346 1.00471 0.99881 0.95313 1.21139 1.00490 0.94645 0.94732 0.91123 1.21836 1.00920 1.00296 0.97300 1.21603 1.00244 0.95286 0.97204 0.91882 0.93429 0.92814 0.92593 0.91674 0.91027 0.85637 0.99610 0.95649 0.92910 0.91973 0.92466 0.93003 0.93205 0.92816 0.92639 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.50 37.16 0.32 -1.55 16 2 C -0.09 -1.14 3.20 -90.62 -0.29 -1.43 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.10 -1.52 5.06 -26.73 -0.14 -1.65 16 5 C 0.09 1.54 2.19 -67.71 -0.15 1.39 16 6 N -0.69 -15.05 6.24 -107.99 -0.67 -15.72 16 7 C 0.20 5.22 5.24 -4.98 -0.03 5.19 16 8 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 9 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 12 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 C -0.14 -2.27 4.45 -26.73 -0.12 -2.39 16 17 C -0.09 -1.21 2.45 -90.62 -0.22 -1.43 16 18 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 19 C -0.15 -1.72 9.19 37.16 0.34 -1.38 16 20 C -0.11 -1.26 4.73 -26.73 -0.13 -1.39 16 21 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.38 6.09 -51.93 -0.32 1.07 16 27 H 0.33 6.92 8.46 -39.29 -0.33 6.59 16 28 H -0.01 -0.39 7.44 -51.93 -0.39 -0.78 16 29 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.06 1.13 7.45 -51.93 -0.39 0.75 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -29.52 284.56 -8.12 -37.63 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.62 Total: 1.62 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.83 Total: -18.30 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.06 Total: -42.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.52 -8.12 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082829629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.066 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds