Wall clock time and date at job start Sun Mar 29 2020 21:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 N 1.46901 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.46900 * 110.99890 * 204.99887 * 6 5 4 8 8 C 1.50698 * 109.47212 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99807 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00538 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99821 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46887 * 59.99940 * 12 10 8 14 14 H 1.48497 * 109.47143 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47352 * 300.00237 * 12 10 8 16 16 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 17 17 C 1.52997 * 109.46817 * 60.00194 * 16 5 4 18 18 H 1.09002 * 109.47153 * 60.00231 * 17 16 5 19 19 C 1.53002 * 109.47143 * 180.02562 * 17 16 5 20 20 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 25 25 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 26 26 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 27 27 H 1.00898 * 111.00476 * 81.04496 * 6 5 4 28 28 H 1.09005 * 109.46934 * 299.99673 * 7 6 5 29 29 H 1.09002 * 109.47391 * 59.99776 * 7 6 5 30 30 H 0.97002 * 120.00684 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.47662 * 180.02562 * 16 5 4 32 32 H 1.09002 * 109.47075 * 300.00932 * 16 5 4 33 33 H 1.09002 * 109.47067 * 59.99982 * 19 17 16 34 34 H 1.09000 * 109.47312 * 180.02562 * 19 17 16 35 35 H 1.09004 * 109.46930 * 300.00065 * 19 17 16 36 36 H 1.09000 * 109.47486 * 299.99829 * 20 2 1 37 37 H 1.09002 * 109.46716 * 179.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 7 2.0202 -2.8566 -2.4480 7 6 1.1366 -3.9733 -2.8090 8 6 1.6707 -4.6587 -4.0403 9 1 2.5757 -4.3004 -4.5082 10 6 1.0039 -5.7433 -4.5695 11 7 -0.0979 -6.1801 -3.9995 12 14 1.6655 -6.5925 -6.0962 13 1 3.0307 -7.1090 -5.8229 14 1 0.7731 -7.7222 -6.4603 15 1 1.7191 -5.6218 -7.2186 16 6 2.0399 -2.8851 0.0003 17 6 1.5299 -2.1637 1.2495 18 1 0.4399 -2.1636 1.2494 19 6 2.0404 -2.8844 2.4988 20 6 2.0399 -0.7211 1.2494 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 3.1301 -0.7218 -1.2489 25 1 1.6767 -0.2076 -2.1392 26 1 0.4400 -2.1638 -1.2490 27 1 2.9695 -3.1736 -2.3199 28 1 1.0969 -4.6861 -1.9853 29 1 0.1347 -3.5938 -3.0097 30 1 -0.5668 -6.9434 -4.3716 31 1 1.6770 -3.9128 0.0003 32 1 3.1299 -2.8850 0.0004 33 1 3.1304 -2.8841 2.4986 34 1 1.6767 -2.3708 3.3887 35 1 1.6774 -3.9123 2.4991 36 1 1.6766 -0.2072 2.1393 37 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082829629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:22 Heat of formation + Delta-G solvation = -55.828797 kcal Electronic energy + Delta-G solvation = -14568.852085 eV Core-core repulsion = 12343.544152 eV Total energy + Delta-G solvation = -2225.307933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48930 -36.59597 -34.52214 -34.01029 -30.89605 -27.76980 -27.58975 -27.25500 -23.95370 -22.62372 -21.64959 -19.64765 -18.50767 -16.80481 -16.52004 -16.07668 -15.54536 -15.12384 -14.74957 -14.62118 -14.31599 -13.96504 -13.63087 -13.30831 -13.04951 -12.76154 -12.68281 -12.58345 -12.49988 -12.19313 -12.08857 -11.85225 -11.66406 -11.41719 -11.17326 -11.08519 -10.71869 -10.65393 -9.01756 -8.23409 -6.35398 1.39575 1.43688 1.51752 2.39041 3.09187 3.52840 3.74306 3.85796 4.08470 4.21638 4.26076 4.41310 4.45310 4.61442 4.67027 4.76350 4.83603 4.86599 4.96017 5.02107 5.05432 5.10240 5.15682 5.22263 5.26107 5.27692 5.37588 5.43374 5.51219 5.55727 5.63936 5.64641 6.02785 6.48219 6.74689 6.90701 7.35836 8.87904 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045725 B = 0.006687 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.203533 B = 4186.374456 C = 4409.420992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.088 0.912 4 C -0.093 4.093 5 C 0.084 3.916 6 N -0.687 5.687 7 C 0.214 3.786 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.975 3.025 13 H -0.265 1.265 14 H -0.281 1.281 15 H -0.268 1.268 16 C -0.133 4.133 17 C -0.089 4.089 18 H 0.062 0.938 19 C -0.143 4.143 20 C -0.100 4.100 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.332 0.668 28 H -0.041 1.041 29 H -0.007 1.007 30 H 0.265 0.735 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 10.700 11.351 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.131 4.131 5 C -0.026 4.026 6 N -0.316 5.316 7 C 0.086 3.914 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.799 3.201 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.193 1.193 16 C -0.173 4.173 17 C -0.108 4.108 18 H 0.081 0.919 19 C -0.200 4.200 20 C -0.138 4.138 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.149 0.851 28 H -0.023 1.023 29 H 0.011 0.989 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.901 11.007 10.881 15.961 hybrid contribution 0.027 -1.584 -0.243 1.603 sum 3.928 9.423 10.638 14.744 Atomic orbital electron populations 1.21930 0.95712 1.01250 1.01869 1.21111 0.95715 0.99545 0.94120 0.89409 1.21472 1.00435 0.93331 0.97872 1.21662 0.98343 0.94897 0.87743 1.60672 1.05629 1.29952 1.35387 1.19141 0.91749 0.86889 0.93638 1.21559 1.10652 1.13445 1.12086 0.91789 1.25991 0.95082 0.97677 1.01025 1.70091 1.18581 1.26458 1.42357 0.85361 0.78356 0.77731 0.78696 1.19023 1.20662 1.19274 1.22226 1.00726 0.98187 0.96122 1.21119 1.00068 0.95823 0.93750 0.91924 1.21804 1.01348 0.99702 0.97166 1.21587 1.00747 0.93774 0.97661 0.93934 0.91203 0.93231 0.91789 0.92827 0.93175 0.85057 1.02298 0.98930 0.92598 0.95191 0.91671 0.92283 0.91081 0.93934 0.90247 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.50 71.98 0.61 -2.92 16 2 C -0.09 -1.95 3.20 -10.79 -0.03 -1.98 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.09 -2.73 5.06 30.59 0.15 -2.58 16 5 C 0.08 3.08 2.19 44.92 0.10 3.18 16 6 N -0.69 -31.11 6.24 -495.57 -3.09 -34.20 16 7 C 0.21 11.99 5.24 85.56 0.45 12.44 16 8 C -0.54 -31.87 9.32 25.60 0.24 -31.64 16 9 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 10 C 0.00 0.02 5.46 84.66 0.46 0.48 16 11 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 12 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 C -0.13 -4.36 4.45 30.59 0.14 -4.22 16 17 C -0.09 -2.24 2.45 -10.79 -0.03 -2.27 16 18 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 19 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 20 C -0.10 -2.07 4.73 30.60 0.14 -1.92 16 21 H 0.04 1.16 4.81 -2.39 -0.01 1.15 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 2.05 6.09 -2.39 -0.01 2.04 16 27 H 0.33 14.33 8.46 -89.70 -0.76 13.57 16 28 H -0.04 -2.45 7.44 -2.38 -0.02 -2.46 16 29 H -0.01 -0.46 8.06 -2.39 -0.02 -0.48 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 32 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.76 284.56 2.37 -62.38 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.26 Total: 16.14 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 2.90 Total: -33.87 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -2.81 Total: -91.90 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.76 2.37 -62.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082829629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.555 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds