Wall clock time and date at job start Sun Mar 29 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47634 * 2 1 4 4 C 1.52996 * 109.47160 * 120.00246 * 2 1 3 5 5 C 1.53000 * 109.47267 * 59.99514 * 4 2 1 6 6 N 1.46901 * 109.47187 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99870 * 154.99992 * 6 5 4 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00103 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99826 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00043 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46802 * 60.00722 * 12 10 8 14 14 H 1.48498 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47344 * 300.00519 * 12 10 8 16 16 C 1.53003 * 109.46931 * 60.00150 * 5 4 2 17 17 C 1.52996 * 109.47260 * 299.99693 * 16 5 4 18 18 H 1.08996 * 109.47580 * 300.00502 * 17 16 5 19 19 C 1.53003 * 109.47260 * 179.97438 * 17 16 5 20 20 C 1.53003 * 109.46924 * 240.00026 * 2 1 3 21 21 H 1.09007 * 109.47027 * 300.00238 * 1 2 3 22 22 H 1.09006 * 109.47162 * 59.99271 * 1 2 3 23 23 H 1.08998 * 109.47634 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47174 * 299.99785 * 4 2 1 25 25 H 1.08996 * 109.47449 * 179.97438 * 4 2 1 26 26 H 1.09000 * 109.47284 * 300.00517 * 5 4 2 27 27 H 1.00901 * 111.00067 * 278.95167 * 6 5 4 28 28 H 1.09001 * 109.46798 * 300.00327 * 7 6 5 29 29 H 1.08998 * 109.46961 * 60.00043 * 7 6 5 30 30 H 0.96997 * 120.00392 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47234 * 60.00407 * 16 5 4 32 32 H 1.09007 * 109.47106 * 180.02562 * 16 5 4 33 33 H 1.09000 * 109.46837 * 300.00400 * 19 17 16 34 34 H 1.08998 * 109.46944 * 60.00568 * 19 17 16 35 35 H 1.09006 * 109.46961 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47339 * 60.00272 * 20 2 1 37 37 H 1.08996 * 109.47234 * 180.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 7 2.0201 -2.8565 2.4483 7 6 1.1365 -3.9731 2.8094 8 6 1.6698 -4.6577 4.0414 9 1 2.5745 -4.2988 4.5097 10 6 1.0023 -5.7414 4.5715 11 7 -0.0995 -6.1781 4.0016 12 14 1.6639 -6.5904 6.0983 13 1 1.7186 -5.6190 7.2202 14 1 0.7706 -7.7191 6.4633 15 1 3.0285 -7.1081 5.8247 16 6 2.0398 -2.8850 -0.0001 17 6 1.5298 -2.1638 -1.2493 18 1 0.4399 -2.1637 -1.2493 19 6 2.0403 -2.8847 -2.4986 20 6 2.0399 -0.7213 -1.2493 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6767 -0.2075 2.1391 25 1 3.1299 -0.7217 1.2490 26 1 0.4399 -2.1637 1.2492 27 1 2.9694 -3.1734 2.3201 28 1 0.1346 -3.5934 3.0100 29 1 1.0967 -4.6859 1.9857 30 1 -0.5689 -6.9407 4.3743 31 1 3.1298 -2.8851 -0.0001 32 1 1.6761 -3.9126 -0.0003 33 1 3.1303 -2.8843 -2.4983 34 1 1.6773 -3.9125 -2.4988 35 1 1.6773 -2.3706 -3.3886 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7217 -1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082829630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:24 Heat of formation + Delta-G solvation = -37.565415 kcal Electronic energy + Delta-G solvation = -14568.009547 eV Core-core repulsion = 12343.493574 eV Total energy + Delta-G solvation = -2224.515973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.24903 -34.84285 -32.95746 -32.42342 -29.20042 -26.62464 -26.18806 -25.69126 -22.01075 -21.22057 -20.33324 -18.46377 -16.39143 -15.18555 -14.96847 -14.61835 -14.04110 -13.87383 -13.57180 -13.10477 -12.69166 -12.45409 -12.12699 -11.90537 -11.61573 -11.47284 -11.26239 -11.05061 -10.78835 -10.74464 -10.65358 -10.48320 -10.22757 -9.93082 -9.82746 -9.52975 -9.09533 -8.44590 -7.17028 -5.99934 -4.01686 3.35435 3.39000 3.42382 4.45430 4.84892 4.88673 4.97543 5.29642 5.35679 5.37505 5.45323 5.52554 5.66407 5.78217 5.82853 5.84744 5.94002 5.96366 6.05610 6.13409 6.15210 6.24320 6.28732 6.44926 6.49525 6.52612 6.62024 6.78805 6.83917 7.33460 7.50285 7.83257 8.18520 8.47583 8.69375 9.07985 9.63028 11.11082 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045728 B = 0.006686 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.166147 B = 4186.612947 C = 4409.547608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.064 0.936 4 C -0.100 4.100 5 C 0.086 3.914 6 N -0.687 5.687 7 C 0.195 3.805 8 C -0.514 4.514 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.141 4.141 17 C -0.091 4.091 18 H 0.070 0.930 19 C -0.146 4.146 20 C -0.106 4.106 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.327 0.673 28 H 0.025 0.975 29 H -0.014 1.014 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 9.611 -10.823 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.138 4.138 5 C -0.025 4.025 6 N -0.315 5.315 7 C 0.069 3.931 8 C -0.553 4.553 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.727 3.273 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.180 4.180 17 C -0.110 4.110 18 H 0.089 0.911 19 C -0.204 4.204 20 C -0.143 4.143 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.144 0.856 28 H 0.043 0.957 29 H 0.004 0.996 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.599 9.895 -10.335 14.542 hybrid contribution 0.467 -1.268 0.106 1.355 sum 3.067 8.628 -10.228 13.728 Atomic orbital electron populations 1.21935 0.95566 1.02302 1.00944 1.21105 0.95869 0.98650 0.95363 0.91806 1.21534 1.00067 0.95687 0.96544 1.21562 0.99432 0.93117 0.88374 1.60756 1.06097 1.32058 1.32625 1.19547 0.92466 0.86331 0.94790 1.21186 1.10263 1.12714 1.11150 0.92097 1.24988 0.95002 0.97065 0.97524 1.69951 1.17281 1.25975 1.40612 0.86554 0.78640 0.78912 0.83243 1.20168 1.21361 1.20305 1.22348 1.00469 0.99882 0.95312 1.21140 1.00490 0.94646 0.94735 0.91121 1.21835 1.00923 1.00293 0.97300 1.21604 1.00243 0.95287 0.97204 0.92814 0.93430 0.91881 0.91675 0.92593 0.91027 0.85640 0.95652 0.99607 0.92911 0.92459 0.91975 0.93008 0.92811 0.93205 0.92642 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.50 37.16 0.32 -1.55 16 2 C -0.09 -1.14 3.19 -90.62 -0.29 -1.43 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.10 -1.52 5.06 -26.73 -0.14 -1.65 16 5 C 0.09 1.54 2.19 -67.71 -0.15 1.39 16 6 N -0.69 -15.05 6.24 -107.99 -0.67 -15.72 16 7 C 0.20 5.22 5.24 -4.97 -0.03 5.19 16 8 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 9 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 12 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.14 -2.27 4.45 -26.73 -0.12 -2.39 16 17 C -0.09 -1.21 2.45 -90.62 -0.22 -1.43 16 18 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 19 C -0.15 -1.72 9.19 37.16 0.34 -1.38 16 20 C -0.11 -1.26 4.73 -26.73 -0.13 -1.39 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 27 H 0.33 6.92 8.46 -39.29 -0.33 6.59 16 28 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 29 H -0.01 -0.39 7.44 -51.93 -0.39 -0.78 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.06 1.13 7.45 -51.92 -0.39 0.75 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -29.52 284.56 -8.12 -37.63 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.62 Total: 1.62 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.83 Total: -18.31 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.06 Total: -42.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.52 -8.12 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082829630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.069 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds