Wall clock time and date at job start Sun Mar 29 2020 21:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47634 * 2 1 4 4 C 1.52996 * 109.47160 * 120.00246 * 2 1 3 5 5 C 1.53000 * 109.47267 * 59.99514 * 4 2 1 6 6 N 1.46901 * 109.47187 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99870 * 154.99992 * 6 5 4 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00103 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99826 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00043 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46802 * 60.00722 * 12 10 8 14 14 H 1.48498 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47344 * 300.00519 * 12 10 8 16 16 C 1.53003 * 109.46931 * 60.00150 * 5 4 2 17 17 C 1.52996 * 109.47260 * 299.99693 * 16 5 4 18 18 H 1.08996 * 109.47580 * 300.00502 * 17 16 5 19 19 C 1.53003 * 109.47260 * 179.97438 * 17 16 5 20 20 C 1.53003 * 109.46924 * 240.00026 * 2 1 3 21 21 H 1.09007 * 109.47027 * 300.00238 * 1 2 3 22 22 H 1.09006 * 109.47162 * 59.99271 * 1 2 3 23 23 H 1.08998 * 109.47634 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47174 * 299.99785 * 4 2 1 25 25 H 1.08996 * 109.47449 * 179.97438 * 4 2 1 26 26 H 1.09000 * 109.47284 * 300.00517 * 5 4 2 27 27 H 1.00901 * 111.00067 * 278.95167 * 6 5 4 28 28 H 1.09001 * 109.46798 * 300.00327 * 7 6 5 29 29 H 1.08998 * 109.46961 * 60.00043 * 7 6 5 30 30 H 0.96997 * 120.00392 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47234 * 60.00407 * 16 5 4 32 32 H 1.09007 * 109.47106 * 180.02562 * 16 5 4 33 33 H 1.09000 * 109.46837 * 300.00400 * 19 17 16 34 34 H 1.08998 * 109.46944 * 60.00568 * 19 17 16 35 35 H 1.09006 * 109.46961 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47339 * 60.00272 * 20 2 1 37 37 H 1.08996 * 109.47234 * 180.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 7 2.0201 -2.8565 2.4483 7 6 1.1365 -3.9731 2.8094 8 6 1.6698 -4.6577 4.0414 9 1 2.5745 -4.2988 4.5097 10 6 1.0023 -5.7414 4.5715 11 7 -0.0995 -6.1781 4.0016 12 14 1.6639 -6.5904 6.0983 13 1 1.7186 -5.6190 7.2202 14 1 0.7706 -7.7191 6.4633 15 1 3.0285 -7.1081 5.8247 16 6 2.0398 -2.8850 -0.0001 17 6 1.5298 -2.1638 -1.2493 18 1 0.4399 -2.1637 -1.2493 19 6 2.0403 -2.8847 -2.4986 20 6 2.0399 -0.7213 -1.2493 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6767 -0.2075 2.1391 25 1 3.1299 -0.7217 1.2490 26 1 0.4399 -2.1637 1.2492 27 1 2.9694 -3.1734 2.3201 28 1 0.1346 -3.5934 3.0100 29 1 1.0967 -4.6859 1.9857 30 1 -0.5689 -6.9407 4.3743 31 1 3.1298 -2.8851 -0.0001 32 1 1.6761 -3.9126 -0.0003 33 1 3.1303 -2.8843 -2.4983 34 1 1.6773 -3.9125 -2.4988 35 1 1.6773 -2.3706 -3.3886 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7217 -1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082829630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:23 Heat of formation + Delta-G solvation = -55.828495 kcal Electronic energy + Delta-G solvation = -14568.801494 eV Core-core repulsion = 12343.493574 eV Total energy + Delta-G solvation = -2225.307920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48932 -36.59560 -34.52263 -34.01075 -30.89606 -27.76979 -27.58957 -27.25505 -23.95387 -22.62324 -21.64953 -19.64775 -18.50766 -16.80482 -16.52024 -16.07664 -15.54548 -15.12402 -14.74966 -14.62123 -14.31639 -13.96524 -13.63029 -13.30836 -13.04943 -12.76162 -12.68257 -12.58321 -12.50013 -12.19339 -12.08802 -11.85226 -11.66401 -11.41708 -11.17349 -11.08524 -10.71864 -10.65366 -9.01776 -8.23434 -6.35380 1.39583 1.43709 1.51761 2.39079 3.09193 3.52838 3.74324 3.85767 4.08472 4.21642 4.26065 4.41314 4.45305 4.61432 4.67029 4.76371 4.83586 4.86583 4.95997 5.02099 5.05439 5.10246 5.15696 5.22238 5.26100 5.27672 5.37574 5.43379 5.51207 5.55719 5.63977 5.64644 6.02831 6.48258 6.74698 6.90682 7.35825 8.87921 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045728 B = 0.006686 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.166147 B = 4186.612947 C = 4409.547608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.088 0.912 4 C -0.093 4.093 5 C 0.084 3.916 6 N -0.687 5.687 7 C 0.214 3.786 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.975 3.025 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.265 1.265 16 C -0.133 4.133 17 C -0.089 4.089 18 H 0.062 0.938 19 C -0.143 4.143 20 C -0.100 4.100 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.332 0.668 28 H -0.007 1.007 29 H -0.041 1.041 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 10.694 -11.354 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.131 4.131 5 C -0.026 4.026 6 N -0.316 5.316 7 C 0.086 3.914 8 C -0.577 4.577 9 H 0.082 0.918 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.799 3.201 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.173 4.173 17 C -0.108 4.108 18 H 0.081 0.919 19 C -0.200 4.200 20 C -0.138 4.138 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.149 0.851 28 H 0.011 0.989 29 H -0.023 1.023 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.905 11.001 -10.884 15.960 hybrid contribution 0.026 -1.582 0.243 1.601 sum 3.931 9.418 -10.641 14.744 Atomic orbital electron populations 1.21930 0.95712 1.01250 1.01869 1.21110 0.95714 0.99546 0.94120 0.89408 1.21470 1.00436 0.93332 0.97872 1.21664 0.98341 0.94899 0.87744 1.60676 1.05628 1.29954 1.35380 1.19140 0.91750 0.86893 0.93635 1.21558 1.10666 1.13502 1.12015 0.91790 1.25991 0.95079 0.97676 1.01038 1.70091 1.18556 1.26494 1.42344 0.85358 0.78354 0.77732 0.78687 1.19275 1.20664 1.19022 1.22228 1.00724 0.98189 0.96120 1.21119 1.00068 0.95824 0.93752 0.91924 1.21804 1.01350 0.99701 0.97166 1.21588 1.00746 0.93775 0.97660 0.93232 0.91204 0.93933 0.92830 0.91788 0.93178 0.85058 0.98938 1.02291 0.92599 0.91663 0.95193 0.92288 0.93926 0.91081 0.90250 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.50 71.98 0.61 -2.92 16 2 C -0.09 -1.95 3.19 -10.80 -0.03 -1.98 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.09 -2.73 5.06 30.59 0.15 -2.58 16 5 C 0.08 3.08 2.19 44.92 0.10 3.17 16 6 N -0.69 -31.11 6.24 -495.56 -3.09 -34.20 16 7 C 0.21 12.00 5.24 85.55 0.45 12.44 16 8 C -0.54 -31.88 9.32 25.60 0.24 -31.64 16 9 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 10 C 0.00 0.02 5.46 84.66 0.46 0.48 16 11 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 12 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 C -0.13 -4.36 4.45 30.59 0.14 -4.22 16 17 C -0.09 -2.24 2.45 -10.79 -0.03 -2.27 16 18 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 19 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 20 C -0.10 -2.07 4.73 30.60 0.14 -1.92 16 21 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 23 H 0.04 1.16 4.81 -2.39 -0.01 1.15 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 2.05 6.09 -2.39 -0.01 2.04 16 27 H 0.33 14.33 8.46 -89.69 -0.76 13.57 16 28 H -0.01 -0.46 8.06 -2.39 -0.02 -0.48 16 29 H -0.04 -2.44 7.44 -2.39 -0.02 -2.46 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.03 1.15 7.45 -2.38 -0.02 1.13 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.76 284.56 2.37 -62.39 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.26 Total: 16.14 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.90 Total: -33.87 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -2.81 Total: -91.90 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.76 2.37 -62.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082829630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.559 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds