Wall clock time and date at job start Sun Mar 29 2020 21:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 C 1.52995 * 109.47266 * 239.99640 * 2 1 3 5 5 C 1.52995 * 109.47522 * 180.02562 * 4 2 1 6 6 N 1.46491 * 109.47673 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99926 * 299.99881 * 6 5 4 8 8 C 1.36933 * 120.00526 * 120.00026 * 6 5 4 9 9 H 1.08008 * 119.99779 * 339.47350 * 8 6 5 10 10 C 1.38810 * 120.00763 * 159.47860 * 8 6 5 11 11 N 1.31625 * 119.99282 * 347.85189 * 10 8 6 12 12 Si 1.86793 * 120.00456 * 167.85399 * 10 8 6 13 13 H 1.48508 * 109.47243 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47160 * 299.99776 * 12 10 8 15 15 H 1.48497 * 109.47403 * 59.99956 * 12 10 8 16 16 C 1.53005 * 109.47130 * 59.99800 * 5 4 2 17 17 C 1.53000 * 109.46916 * 300.00170 * 16 5 4 18 18 H 1.09004 * 109.47231 * 179.97438 * 17 16 5 19 19 C 1.52996 * 109.47711 * 299.99862 * 17 16 5 20 20 C 1.52999 * 109.46849 * 119.99553 * 2 1 3 21 21 H 1.08991 * 109.46779 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47058 * 300.00561 * 1 2 3 23 23 H 1.09004 * 109.46645 * 60.00492 * 1 2 3 24 24 H 1.09004 * 109.47397 * 60.00328 * 4 2 1 25 25 H 1.09001 * 109.47284 * 300.00333 * 4 2 1 26 26 H 1.09001 * 109.46985 * 300.00360 * 5 4 2 27 27 H 1.08997 * 109.47304 * 264.87860 * 7 6 5 28 28 H 1.09002 * 109.46847 * 24.87956 * 7 6 5 29 29 H 1.09005 * 109.47389 * 144.87655 * 7 6 5 30 30 H 0.97006 * 119.99502 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.46729 * 60.00403 * 16 5 4 32 32 H 1.08999 * 109.47075 * 180.02562 * 16 5 4 33 33 H 1.08997 * 109.47651 * 180.02562 * 19 17 16 34 34 H 1.08999 * 109.46964 * 300.00420 * 19 17 16 35 35 H 1.09004 * 109.46988 * 59.99588 * 19 17 16 36 36 H 1.08997 * 109.47197 * 299.99801 * 20 2 1 37 37 H 1.09001 * 109.47205 * 60.00592 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2489 6 7 4.0584 -1.4120 -2.4452 7 6 3.7041 -2.8143 -2.6779 8 6 4.8461 -0.7464 -3.3461 9 1 4.8428 0.3334 -3.3721 10 6 5.6489 -1.4592 -4.2260 11 7 5.8402 -2.7488 -4.0448 12 14 6.4575 -0.5885 -5.6672 13 1 7.2563 -1.5650 -6.4507 14 1 5.4109 0.0053 -6.5373 15 1 7.3478 0.4863 -5.1600 16 6 4.0796 -1.4434 0.0005 17 6 3.5696 -0.7220 1.2496 18 1 3.9322 -1.2363 2.1397 19 6 4.0800 0.7203 1.2499 20 6 2.0400 -0.7212 1.2493 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6768 -0.2075 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.9337 0.3056 -1.2487 27 1 4.4998 -3.4574 -2.3019 28 1 2.7742 -3.0452 -2.1581 29 1 3.5745 -2.9839 -3.7468 30 1 6.4009 -3.2471 -4.6599 31 1 3.7158 -2.4710 0.0002 32 1 5.1695 -1.4434 0.0009 33 1 3.7171 1.2340 2.1400 34 1 5.1700 0.7199 1.2501 35 1 3.7171 1.2343 0.3598 36 1 1.6767 -0.2073 2.1392 37 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082832725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:25 Heat of formation + Delta-G solvation = -5.847127 kcal Electronic energy + Delta-G solvation = -15091.801099 eV Core-core repulsion = 12868.660534 eV Total energy + Delta-G solvation = -2223.140565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98451 -35.02300 -32.72898 -31.48180 -28.49884 -26.48669 -25.93944 -25.83488 -23.01094 -20.87609 -19.80919 -17.94077 -16.61970 -15.22913 -14.55868 -14.36232 -13.89983 -13.55467 -13.29150 -12.91255 -12.63459 -12.19119 -11.94692 -11.72211 -11.44971 -11.10509 -10.90993 -10.79865 -10.63278 -10.51547 -10.36234 -10.22753 -10.13027 -9.98638 -9.55957 -9.48737 -9.19884 -8.44219 -6.65028 -5.61990 -3.05397 3.43578 3.48644 3.49705 4.56037 5.05874 5.12389 5.18688 5.49016 5.54983 5.60247 5.64998 5.79134 5.93600 5.97296 6.02203 6.08372 6.13033 6.17352 6.30272 6.33633 6.41137 6.45574 6.53175 6.68044 6.72394 6.77430 6.91940 6.93531 7.20809 7.22568 7.53334 7.83012 7.90540 8.50189 9.34876 10.00069 10.48729 11.42741 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.008707 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.244852 B = 3215.210576 C = 3316.168000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.179 3.821 6 N -0.599 5.599 7 C 0.166 3.834 8 C -0.248 4.248 9 H 0.067 0.933 10 C -0.003 4.003 11 N -0.911 5.911 12 Si 0.903 3.097 13 H -0.291 1.291 14 H -0.286 1.286 15 H -0.284 1.284 16 C -0.124 4.124 17 C -0.090 4.090 18 H 0.058 0.942 19 C -0.148 4.148 20 C -0.104 4.104 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.026 0.974 28 H -0.003 1.003 29 H 0.041 0.959 30 H 0.251 0.749 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 4.133 9.281 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.164 4.164 5 C 0.071 3.929 6 N -0.321 5.321 7 C 0.021 3.979 8 C -0.378 4.378 9 H 0.084 0.916 10 C -0.200 4.200 11 N -0.557 5.557 12 Si 0.734 3.266 13 H -0.217 1.217 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.164 4.164 17 C -0.109 4.109 18 H 0.076 0.924 19 C -0.205 4.205 20 C -0.142 4.142 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.015 0.985 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.303 3.996 9.141 12.364 hybrid contribution 0.545 0.286 -0.816 1.022 sum -6.758 4.282 8.324 11.546 Atomic orbital electron populations 1.21824 0.96174 1.01319 1.00852 1.21167 0.94493 0.99839 0.95608 0.91368 1.22112 0.98606 0.99816 0.95883 1.20346 0.90919 0.95640 0.86017 1.43983 1.57691 1.09619 1.20809 1.20728 0.93719 0.84698 0.98734 1.19210 1.17119 0.90718 1.10725 0.91569 1.24963 0.98416 0.96068 1.00587 1.70084 1.41258 1.06754 1.37628 0.86350 0.79065 0.78456 0.82768 1.21718 1.21241 1.21087 1.22105 1.00642 0.99151 0.94470 1.21099 0.95016 0.96339 0.98486 0.92356 1.21911 1.00805 0.96511 1.01242 1.21570 0.95432 1.00139 0.97025 0.93068 0.93436 0.93005 0.92529 0.92641 0.92045 0.95600 0.98493 0.94032 0.93899 0.92884 0.92273 0.93733 0.92992 0.91884 0.92974 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 2 C -0.09 -1.33 2.45 -90.62 -0.22 -1.55 16 3 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 4 C -0.12 -2.25 4.47 -26.74 -0.12 -2.37 16 5 C 0.18 3.73 2.31 -67.94 -0.16 3.57 16 6 N -0.60 -15.41 2.82 -173.49 -0.49 -15.90 16 7 C 0.17 4.23 7.99 59.85 0.48 4.71 16 8 C -0.25 -6.98 9.63 -15.06 -0.14 -7.13 16 9 H 0.07 1.82 7.80 -52.48 -0.41 1.41 16 10 C 0.00 -0.08 5.13 -17.43 -0.09 -0.17 16 11 N -0.91 -27.22 10.52 55.49 0.58 -26.64 16 12 Si 0.90 22.37 29.57 -169.99 -5.03 17.35 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 C -0.12 -2.36 4.73 -26.73 -0.13 -2.48 16 17 C -0.09 -1.36 3.19 -90.64 -0.29 -1.65 16 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.15 -2.09 8.50 37.16 0.32 -1.78 16 20 C -0.10 -1.43 4.73 -26.75 -0.13 -1.56 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 1.03 6.66 -51.93 -0.35 0.68 16 26 H 0.06 1.31 6.13 -51.93 -0.32 0.99 16 27 H 0.03 0.71 7.41 -51.93 -0.38 0.33 16 28 H 0.00 -0.08 6.44 -51.93 -0.33 -0.41 16 29 H 0.04 1.14 7.14 -51.93 -0.37 0.77 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 276.77 15.07 4.17 4.17 Total: -1.00 -29.36 276.77 -7.41 -36.77 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.51 Total: -3.89 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -0.14 Total: -11.86 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.09 Total: -42.54 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.36 -7.41 -36.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082832725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.920 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds