Wall clock time and date at job start Sun Mar 29 2020 21:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 C 1.52995 * 109.47266 * 239.99640 * 2 1 3 5 5 C 1.52995 * 109.47522 * 180.02562 * 4 2 1 6 6 N 1.46491 * 109.47673 * 180.02562 * 5 4 2 7 7 C 1.46503 * 119.99926 * 299.99881 * 6 5 4 8 8 C 1.36933 * 120.00526 * 120.00026 * 6 5 4 9 9 H 1.08008 * 119.99779 * 339.47350 * 8 6 5 10 10 C 1.38810 * 120.00763 * 159.47860 * 8 6 5 11 11 N 1.31625 * 119.99282 * 347.85189 * 10 8 6 12 12 Si 1.86793 * 120.00456 * 167.85399 * 10 8 6 13 13 H 1.48508 * 109.47243 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47160 * 299.99776 * 12 10 8 15 15 H 1.48497 * 109.47403 * 59.99956 * 12 10 8 16 16 C 1.53005 * 109.47130 * 59.99800 * 5 4 2 17 17 C 1.53000 * 109.46916 * 300.00170 * 16 5 4 18 18 H 1.09004 * 109.47231 * 179.97438 * 17 16 5 19 19 C 1.52996 * 109.47711 * 299.99862 * 17 16 5 20 20 C 1.52999 * 109.46849 * 119.99553 * 2 1 3 21 21 H 1.08991 * 109.46779 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47058 * 300.00561 * 1 2 3 23 23 H 1.09004 * 109.46645 * 60.00492 * 1 2 3 24 24 H 1.09004 * 109.47397 * 60.00328 * 4 2 1 25 25 H 1.09001 * 109.47284 * 300.00333 * 4 2 1 26 26 H 1.09001 * 109.46985 * 300.00360 * 5 4 2 27 27 H 1.08997 * 109.47304 * 264.87860 * 7 6 5 28 28 H 1.09002 * 109.46847 * 24.87956 * 7 6 5 29 29 H 1.09005 * 109.47389 * 144.87655 * 7 6 5 30 30 H 0.97006 * 119.99502 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.46729 * 60.00403 * 16 5 4 32 32 H 1.08999 * 109.47075 * 180.02562 * 16 5 4 33 33 H 1.08997 * 109.47651 * 180.02562 * 19 17 16 34 34 H 1.08999 * 109.46964 * 300.00420 * 19 17 16 35 35 H 1.09004 * 109.46988 * 59.99588 * 19 17 16 36 36 H 1.08997 * 109.47197 * 299.99801 * 20 2 1 37 37 H 1.09001 * 109.47205 * 60.00592 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2489 6 7 4.0584 -1.4120 -2.4452 7 6 3.7041 -2.8143 -2.6779 8 6 4.8461 -0.7464 -3.3461 9 1 4.8428 0.3334 -3.3721 10 6 5.6489 -1.4592 -4.2260 11 7 5.8402 -2.7488 -4.0448 12 14 6.4575 -0.5885 -5.6672 13 1 7.2563 -1.5650 -6.4507 14 1 5.4109 0.0053 -6.5373 15 1 7.3478 0.4863 -5.1600 16 6 4.0796 -1.4434 0.0005 17 6 3.5696 -0.7220 1.2496 18 1 3.9322 -1.2363 2.1397 19 6 4.0800 0.7203 1.2499 20 6 2.0400 -0.7212 1.2493 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6768 -0.2075 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.9337 0.3056 -1.2487 27 1 4.4998 -3.4574 -2.3019 28 1 2.7742 -3.0452 -2.1581 29 1 3.5745 -2.9839 -3.7468 30 1 6.4009 -3.2471 -4.6599 31 1 3.7158 -2.4710 0.0002 32 1 5.1695 -1.4434 0.0009 33 1 3.7171 1.2340 2.1400 34 1 5.1700 0.7199 1.2501 35 1 3.7171 1.2343 0.3598 36 1 1.6767 -0.2073 2.1392 37 1 1.6767 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082832725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:25 Heat of formation + Delta-G solvation = -21.740640 kcal Electronic energy + Delta-G solvation = -15092.490293 eV Core-core repulsion = 12868.660534 eV Total energy + Delta-G solvation = -2223.829760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39802 -36.89745 -33.94687 -33.44221 -30.26396 -28.08780 -27.54112 -27.16411 -24.93321 -22.21158 -21.37580 -19.36870 -18.66816 -17.05689 -16.12625 -15.76774 -15.61341 -14.86217 -14.70398 -14.48784 -14.42982 -13.75673 -13.38519 -12.98134 -12.92201 -12.75285 -12.55461 -12.49316 -12.29833 -12.09800 -12.02896 -11.98955 -11.70990 -11.56046 -11.08497 -10.97156 -10.67717 -10.55206 -8.75276 -7.79972 -5.25827 1.44500 1.47425 1.53923 2.51315 3.32043 3.62237 3.83782 3.97693 4.18938 4.31767 4.36022 4.48918 4.56703 4.69683 4.76890 4.81242 4.89401 4.91764 4.96613 5.05316 5.10925 5.16989 5.24186 5.28421 5.29876 5.44079 5.46159 5.48747 5.58388 5.59220 5.69079 5.75319 5.77767 6.35236 7.17746 7.93042 8.36269 9.23144 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.008707 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.244852 B = 3215.210576 C = 3316.168000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.115 4.115 5 C 0.173 3.827 6 N -0.617 5.617 7 C 0.185 3.815 8 C -0.259 4.259 9 H 0.069 0.931 10 C -0.059 4.059 11 N -0.942 5.942 12 Si 0.969 3.031 13 H -0.294 1.294 14 H -0.279 1.279 15 H -0.276 1.276 16 C -0.116 4.116 17 C -0.085 4.085 18 H 0.074 0.926 19 C -0.146 4.146 20 C -0.100 4.100 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.054 0.946 27 H -0.002 1.002 28 H 0.025 0.975 29 H 0.013 0.987 30 H 0.246 0.754 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 5.534 10.713 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.154 4.154 5 C 0.067 3.933 6 N -0.339 5.339 7 C 0.040 3.960 8 C -0.390 4.390 9 H 0.086 0.914 10 C -0.254 4.254 11 N -0.590 5.590 12 Si 0.797 3.203 13 H -0.220 1.220 14 H -0.205 1.205 15 H -0.201 1.201 16 C -0.155 4.155 17 C -0.104 4.104 18 H 0.092 0.908 19 C -0.203 4.203 20 C -0.137 4.137 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.584 5.425 10.603 14.681 hybrid contribution 0.926 -0.135 -1.224 1.541 sum -7.658 5.290 9.378 13.213 Atomic orbital electron populations 1.21779 0.94171 1.01790 1.02005 1.21137 0.96106 0.99488 0.93884 0.90944 1.21964 0.95982 0.99829 0.97610 1.20576 0.92854 0.94853 0.85042 1.44269 1.57672 1.09646 1.22339 1.20399 0.93956 0.84655 0.97003 1.19564 1.16982 0.91097 1.11327 0.91351 1.25763 0.99509 0.96842 1.03248 1.70263 1.42187 1.08127 1.38433 0.85306 0.78123 0.77366 0.79469 1.22027 1.20523 1.20144 1.21954 0.98694 0.98972 0.95905 1.21079 0.96311 0.96477 0.96549 0.90786 1.21889 1.00270 0.95948 1.02154 1.21560 0.93885 1.00530 0.97718 0.92968 0.91087 0.93123 0.93926 0.93336 0.92788 0.98374 0.95646 0.96822 0.94452 0.93901 0.95273 0.90811 0.93956 0.92898 0.89918 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.09 -2.28 2.45 -10.79 -0.03 -2.30 16 3 H 0.07 1.87 6.43 -2.39 -0.02 1.85 16 4 C -0.11 -4.02 4.47 30.59 0.14 -3.88 16 5 C 0.17 7.23 2.31 44.99 0.10 7.34 16 6 N -0.62 -32.42 2.82 -702.79 -1.98 -34.40 16 7 C 0.18 9.73 7.99 127.77 1.02 10.75 16 8 C -0.26 -14.88 9.63 84.03 0.81 -14.07 16 9 H 0.07 3.80 7.80 -2.91 -0.02 3.78 16 10 C -0.06 -3.46 5.13 84.86 0.43 -3.03 16 11 N -0.94 -57.99 10.52 21.65 0.23 -57.76 16 12 Si 0.97 46.63 29.57 68.60 2.03 48.66 16 13 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 C -0.12 -4.39 4.73 30.60 0.14 -4.24 16 17 C -0.09 -2.37 3.19 -10.81 -0.03 -2.40 16 18 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 19 C -0.15 -3.78 8.50 71.98 0.61 -3.16 16 20 C -0.10 -2.37 4.73 30.58 0.14 -2.23 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.75 6.66 -2.39 -0.02 1.73 16 26 H 0.05 2.32 6.13 -2.39 -0.01 2.31 16 27 H 0.00 -0.12 7.41 -2.39 -0.02 -0.13 16 28 H 0.03 1.16 6.44 -2.39 -0.02 1.14 16 29 H 0.01 0.75 7.14 -2.38 -0.02 0.74 16 30 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.04 1.68 7.67 -2.39 -0.02 1.66 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.47 4.81 -2.39 -0.01 1.46 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.15 276.77 5.29 -58.86 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.01 Total: 4.21 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.01 Total: -19.57 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -1.75 Total: -92.16 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -64.15 5.29 -58.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082832725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.120 kcal (2) G-P(sol) polarization free energy of solvation -64.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds