Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47562 * 2 1 4 4 C 1.53008 * 109.47239 * 240.00183 * 2 1 3 5 5 C 1.52993 * 109.47084 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47714 * 60.00046 * 5 4 2 7 7 H 1.08997 * 109.47089 * 59.99386 * 6 5 4 8 8 N 1.46895 * 109.47522 * 180.02562 * 6 5 4 9 9 C 1.46904 * 111.00014 * 274.99938 * 8 6 5 10 10 C 1.50701 * 109.47195 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27796 * 10 9 8 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.53008 * 109.46807 * 300.00123 * 6 5 4 19 19 C 1.52993 * 109.47084 * 59.99491 * 18 6 5 20 20 H 1.09001 * 109.46930 * 180.02562 * 19 18 6 21 21 C 1.53001 * 109.47230 * 60.00397 * 19 18 6 22 22 H 1.09001 * 109.47086 * 299.99925 * 1 2 3 23 23 H 1.09008 * 109.47103 * 59.99772 * 1 2 3 24 24 H 1.09005 * 109.47679 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46694 * 300.00348 * 4 2 1 26 26 H 1.08999 * 109.46995 * 59.99820 * 4 2 1 27 27 H 1.08997 * 109.47344 * 299.99588 * 5 4 2 28 28 H 1.09001 * 109.46930 * 179.97438 * 5 4 2 29 29 H 1.00901 * 110.99972 * 38.94942 * 8 6 5 30 30 H 1.09000 * 109.47038 * 59.99386 * 9 8 6 31 31 H 1.09007 * 109.46566 * 299.99918 * 9 8 6 32 32 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.46995 * 180.02562 * 18 6 5 34 34 H 1.08997 * 109.46694 * 299.99505 * 18 6 5 35 35 H 1.08999 * 109.47014 * 59.99357 * 21 19 18 36 36 H 1.09000 * 109.47294 * 179.97438 * 21 19 18 37 37 H 1.09001 * 109.46928 * 299.99713 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0002 7 1 3.7158 -2.4709 0.0000 8 7 5.5484 -1.4434 0.0008 9 6 6.0753 -2.5665 -0.7860 10 6 7.5817 -2.5339 -0.7618 11 1 8.0963 -1.7563 -0.2168 12 6 8.3029 -3.4931 -1.4405 13 7 7.6763 -4.4398 -2.1045 14 14 10.1702 -3.4482 -1.4170 15 1 10.6274 -2.2918 -0.6052 16 1 10.6883 -4.7065 -0.8224 17 1 10.6797 -3.3102 -2.8050 18 6 3.5694 -0.7222 1.2495 19 6 2.0395 -0.7216 1.2491 20 1 1.6762 -0.2074 2.1389 21 6 1.5290 -2.1639 1.2489 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0277 -0.0005 25 1 1.6766 -1.7488 -1.2493 26 1 1.6766 -0.2074 -2.1393 27 1 3.9336 0.3057 -1.2488 28 1 3.9332 -1.2360 -2.1387 29 1 5.9102 -0.5641 -0.3371 30 1 5.7261 -2.4845 -1.8153 31 1 5.7256 -3.5058 -0.3575 32 1 8.1837 -5.1143 -2.5823 33 1 3.9328 -1.2360 2.1395 34 1 3.9332 0.3053 1.2497 35 1 1.8920 -2.6780 2.1388 36 1 0.4390 -2.1636 1.2491 37 1 1.8923 -2.6778 0.3589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082836120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = -35.532400 kcal Electronic energy + Delta-G solvation = -14551.707499 eV Core-core repulsion = 12327.279684 eV Total energy + Delta-G solvation = -2224.427815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34775 -35.14357 -32.63306 -31.48377 -30.34850 -27.40764 -26.15321 -24.35133 -22.08459 -21.62455 -20.46454 -18.26079 -16.47101 -15.42369 -14.87089 -14.49981 -14.01203 -13.81831 -13.67764 -13.14022 -12.74197 -12.20415 -12.16251 -12.00208 -11.82365 -11.46289 -11.32404 -11.07526 -10.78602 -10.70907 -10.63469 -10.41456 -10.22863 -9.91490 -9.77674 -9.54382 -9.07734 -8.45561 -7.17136 -6.00387 -4.01976 3.32569 3.39695 3.45100 4.45448 4.81752 4.86867 4.94368 5.30860 5.35429 5.40008 5.50110 5.52028 5.61359 5.66577 5.79781 5.81572 5.88081 6.03070 6.04830 6.12767 6.17013 6.23348 6.30306 6.43988 6.45504 6.53897 6.60572 6.78710 6.85288 7.33321 7.50065 7.83646 8.18225 8.47452 8.69377 9.08323 9.62985 11.10751 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.064068 B = 0.006106 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.930687 B = 4584.293826 C = 4643.168572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.111 4.111 5 C -0.148 4.148 6 C 0.087 3.913 7 H 0.072 0.928 8 N -0.687 5.687 9 C 0.194 3.806 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.100 4.100 19 C -0.084 4.084 20 H 0.063 0.937 21 C -0.152 4.152 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.327 0.673 30 H -0.014 1.014 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.914 7.570 3.760 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.187 4.187 6 C -0.024 4.024 7 H 0.090 0.910 8 N -0.316 5.316 9 C 0.068 3.932 10 C -0.551 4.551 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.139 4.139 19 C -0.103 4.103 20 H 0.082 0.918 21 C -0.209 4.209 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.004 0.996 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.802 7.055 4.257 15.224 hybrid contribution 0.842 0.192 -1.068 1.373 sum -11.960 7.247 3.190 14.343 Atomic orbital electron populations 1.21894 0.95870 1.01753 1.01024 1.21137 0.94802 0.99275 0.95267 0.91617 1.21571 0.95952 1.00580 0.96764 1.22288 0.95324 1.00824 1.00258 1.21558 0.89842 0.98691 0.92336 0.91015 1.60751 1.03881 1.07504 1.59432 1.19563 0.94761 0.88695 0.90222 1.21258 0.91278 1.12016 1.30554 0.91985 1.24991 0.98808 0.95444 0.95384 1.69973 1.35426 1.15129 1.33323 0.86445 0.85418 0.77971 0.77595 1.19668 1.21013 1.21136 1.21538 0.93108 1.00422 0.98800 1.21112 0.96031 0.96128 0.97053 0.91844 1.21988 1.00167 0.96473 1.02303 0.93078 0.93175 0.92431 0.91837 0.92802 0.92486 0.91961 0.85639 0.99596 0.95641 0.93027 0.91632 0.92610 0.92897 0.93068 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.84 37.15 0.33 -1.15 16 2 C -0.09 -1.02 2.50 -90.62 -0.23 -1.25 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.47 4.93 -26.73 -0.13 -1.60 16 5 C -0.15 -2.38 5.17 -26.74 -0.14 -2.52 16 6 C 0.09 1.55 2.19 -67.71 -0.15 1.40 16 7 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 8 N -0.69 -15.06 6.24 -107.99 -0.67 -15.73 16 9 C 0.19 5.19 5.24 -4.97 -0.03 5.16 16 10 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 11 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 14 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.10 -1.52 5.06 -26.73 -0.14 -1.66 16 19 C -0.08 -1.06 2.72 -90.62 -0.25 -1.30 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.15 -1.89 8.15 37.16 0.30 -1.58 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 25 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 28 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 29 H 0.33 6.92 8.46 -39.29 -0.33 6.58 16 30 H -0.01 -0.39 7.44 -51.93 -0.39 -0.77 16 31 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 37 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -29.58 280.92 -8.00 -37.59 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.44 Total: 1.59 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.84 Total: -18.13 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.06 Total: -42.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.58 -8.00 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082836120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.054 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds