Wall clock time and date at job start Sun Mar 29 2020 21:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46871 * 2 1 4 4 C 1.53003 * 109.46778 * 240.00480 * 2 1 3 5 5 C 1.53003 * 109.46778 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47319 * 59.99592 * 5 4 2 7 7 H 1.08998 * 109.47208 * 60.00134 * 6 5 4 8 8 N 1.46503 * 109.47110 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99954 * 59.99786 * 8 6 5 10 10 C 1.36936 * 119.99699 * 240.00381 * 8 6 5 11 11 H 1.07997 * 119.99971 * 334.63304 * 10 8 6 12 12 C 1.38818 * 119.99857 * 154.64075 * 10 8 6 13 13 N 1.31618 * 119.99903 * 4.01478 * 12 10 8 14 14 Si 1.86800 * 119.99547 * 184.01212 * 12 10 8 15 15 H 1.48496 * 109.47372 * 90.00305 * 14 12 10 16 16 H 1.48506 * 109.46573 * 209.99724 * 14 12 10 17 17 H 1.48498 * 109.47266 * 329.99623 * 14 12 10 18 18 C 1.52997 * 109.47083 * 300.00139 * 6 5 4 19 19 C 1.52996 * 109.47492 * 60.00075 * 18 6 5 20 20 H 1.08997 * 109.47413 * 180.02562 * 19 18 6 21 21 C 1.52995 * 109.47221 * 59.99806 * 19 18 6 22 22 H 1.09004 * 109.47062 * 299.99591 * 1 2 3 23 23 H 1.08999 * 109.47294 * 59.99662 * 1 2 3 24 24 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47027 * 299.99424 * 4 2 1 26 26 H 1.08999 * 109.47325 * 59.99877 * 4 2 1 27 27 H 1.08998 * 109.46871 * 299.99519 * 5 4 2 28 28 H 1.09004 * 109.47062 * 179.97438 * 5 4 2 29 29 H 1.09005 * 109.47257 * 264.47897 * 9 8 6 30 30 H 1.09000 * 109.47063 * 144.48238 * 9 8 6 31 31 H 1.08993 * 109.47036 * 24.48212 * 9 8 6 32 32 H 0.96996 * 119.99876 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47119 * 180.02562 * 18 6 5 34 34 H 1.09001 * 109.46952 * 299.99557 * 18 6 5 35 35 H 1.08999 * 109.47225 * 60.00185 * 21 19 18 36 36 H 1.08995 * 109.47523 * 180.02562 * 21 19 18 37 37 H 1.09004 * 109.46896 * 300.00259 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0002 7 1 3.7159 -2.4709 0.0000 8 7 5.5445 -1.4433 0.0008 9 6 6.2770 -0.1746 0.0014 10 6 6.2292 -2.6293 0.0006 11 1 5.7671 -3.5196 0.4007 12 6 7.5172 -2.6870 -0.5138 13 7 8.1101 -1.5875 -0.9287 14 14 8.4090 -4.3251 -0.6172 15 1 8.1238 -4.9622 -1.9279 16 1 9.8711 -4.1020 -0.4831 17 1 7.9413 -5.2133 0.4772 18 6 3.5695 -0.7222 1.2494 19 6 2.0396 -0.7216 1.2492 20 1 1.6762 -0.2074 2.1390 21 6 1.5290 -2.1639 1.2489 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6767 -1.7488 -1.2494 26 1 1.6766 -0.2073 -2.1393 27 1 3.9336 0.3058 -1.2488 28 1 3.9333 -1.2359 -2.1389 29 1 6.5447 0.0910 -1.0214 30 1 7.1828 -0.2783 0.5987 31 1 5.6486 0.6075 0.4272 32 1 9.0099 -1.6280 -1.2884 33 1 3.9329 -1.2360 2.1394 34 1 3.9333 0.3054 1.2497 35 1 1.8920 -2.6780 2.1388 36 1 0.4391 -2.1636 1.2483 37 1 1.8924 -2.6777 0.3588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082841887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:38 Heat of formation + Delta-G solvation = -3.113782 kcal Electronic energy + Delta-G solvation = -15088.836647 eV Core-core repulsion = 12865.814608 eV Total energy + Delta-G solvation = -2223.022038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.08880 -35.21992 -31.99700 -31.24131 -29.65017 -26.83713 -25.93033 -25.07374 -22.30031 -21.75735 -19.69559 -17.78732 -16.68160 -15.39389 -14.86002 -14.11629 -13.81255 -13.59059 -13.16425 -12.91048 -12.60356 -12.07012 -11.99377 -11.87198 -11.56850 -11.05392 -10.93997 -10.84036 -10.66230 -10.48980 -10.32347 -10.17156 -10.06492 -9.97655 -9.62010 -9.40708 -9.21463 -8.41926 -6.59968 -5.64041 -3.09397 3.42341 3.48226 3.49422 4.55010 5.04934 5.06158 5.15628 5.48903 5.53988 5.66537 5.71095 5.78095 5.81860 5.90615 6.03876 6.05639 6.10015 6.24624 6.26497 6.29559 6.42558 6.49382 6.53546 6.67517 6.74519 6.76674 6.90458 6.97444 7.21036 7.24870 7.61297 7.85941 7.95275 8.53090 9.36588 9.99804 10.50257 11.40573 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050272 B = 0.008296 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.835552 B = 3374.131821 C = 3524.573243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.180 3.820 7 H 0.061 0.939 8 N -0.603 5.603 9 C 0.168 3.832 10 C -0.250 4.250 11 H 0.067 0.933 12 C 0.002 3.998 13 N -0.911 5.911 14 Si 0.902 3.098 15 H -0.288 1.288 16 H -0.291 1.291 17 H -0.281 1.281 18 C -0.127 4.127 19 C -0.082 4.082 20 H 0.058 0.942 21 C -0.150 4.150 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.022 0.978 30 H 0.048 0.952 31 H -0.008 1.008 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 2.478 2.107 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.170 4.170 6 C 0.072 3.928 7 H 0.080 0.920 8 N -0.325 5.325 9 C 0.024 3.976 10 C -0.379 4.379 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.557 5.557 14 Si 0.732 3.268 15 H -0.215 1.215 16 H -0.218 1.218 17 H -0.206 1.206 18 C -0.166 4.166 19 C -0.101 4.101 20 H 0.076 0.924 21 C -0.207 4.207 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.397 2.495 2.053 12.811 hybrid contribution 0.640 -0.782 -0.163 1.024 sum -11.757 1.712 1.889 12.030 Atomic orbital electron populations 1.21895 0.96147 1.01567 1.00838 1.21127 0.94454 0.99360 0.95499 0.91730 1.21622 0.96890 1.00090 0.96354 1.22078 0.93234 1.01087 1.00560 1.20349 0.84566 0.96961 0.90948 0.92037 1.43968 0.99069 1.03126 1.86291 1.20789 0.93478 0.84373 0.98996 1.19246 0.97507 0.88058 1.33123 0.91571 1.25147 0.98387 0.96851 0.99157 1.70093 1.13754 1.25246 1.46614 0.86292 0.78821 0.83825 0.77891 1.21501 1.21782 1.20618 1.22090 0.93011 1.01178 1.00350 1.21078 0.96356 0.95853 0.96786 0.92379 1.21973 0.99858 0.96706 1.02194 0.93265 0.93277 0.92545 0.92160 0.93160 0.92889 0.92350 0.96002 0.93294 0.98991 0.93895 0.92486 0.92658 0.93157 0.93305 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.84 37.16 0.33 -1.34 16 2 C -0.09 -1.18 2.50 -90.62 -0.23 -1.41 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.68 4.93 -26.73 -0.13 -1.81 16 5 C -0.13 -2.47 5.20 -26.73 -0.14 -2.61 16 6 C 0.18 3.77 2.31 -67.93 -0.16 3.61 16 7 H 0.06 1.32 6.17 -51.93 -0.32 1.00 16 8 N -0.60 -15.57 2.82 -173.48 -0.49 -16.05 16 9 C 0.17 4.33 7.97 59.85 0.48 4.80 16 10 C -0.25 -7.05 9.59 -15.06 -0.14 -7.19 16 11 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 12 C 0.00 0.06 5.38 -17.43 -0.09 -0.04 16 13 N -0.91 -27.16 10.13 55.49 0.56 -26.60 16 14 Si 0.90 22.29 29.56 -169.99 -5.02 17.27 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.13 -2.31 4.72 -26.73 -0.13 -2.43 16 19 C -0.08 -1.19 2.72 -90.62 -0.25 -1.44 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.15 -2.06 8.15 37.16 0.30 -1.76 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.62 6.42 -51.93 -0.33 0.28 16 25 H 0.06 0.89 6.43 -51.93 -0.33 0.55 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.60 7.44 -51.93 -0.39 0.22 16 30 H 0.05 1.37 7.03 -51.93 -0.37 1.00 16 31 H -0.01 -0.19 6.44 -51.93 -0.33 -0.53 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 1.03 6.66 -51.93 -0.35 0.69 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.58 6.42 -51.93 -0.33 0.24 16 37 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -29.33 272.88 -7.32 -36.65 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -6.33 Total: -3.77 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.16 Total: -11.61 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.07 Total: -42.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.33 -7.32 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082841887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.540 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds