Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46871 * 2 1 4 4 C 1.53003 * 109.46778 * 240.00480 * 2 1 3 5 5 C 1.53003 * 109.46778 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47319 * 59.99592 * 5 4 2 7 7 H 1.08998 * 109.47208 * 60.00134 * 6 5 4 8 8 N 1.46503 * 109.47110 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99954 * 59.99786 * 8 6 5 10 10 C 1.36936 * 119.99699 * 240.00381 * 8 6 5 11 11 H 1.07997 * 119.99971 * 334.63304 * 10 8 6 12 12 C 1.38818 * 119.99857 * 154.64075 * 10 8 6 13 13 N 1.31618 * 119.99903 * 4.01478 * 12 10 8 14 14 Si 1.86800 * 119.99547 * 184.01212 * 12 10 8 15 15 H 1.48496 * 109.47372 * 90.00305 * 14 12 10 16 16 H 1.48506 * 109.46573 * 209.99724 * 14 12 10 17 17 H 1.48498 * 109.47266 * 329.99623 * 14 12 10 18 18 C 1.52997 * 109.47083 * 300.00139 * 6 5 4 19 19 C 1.52996 * 109.47492 * 60.00075 * 18 6 5 20 20 H 1.08997 * 109.47413 * 180.02562 * 19 18 6 21 21 C 1.52995 * 109.47221 * 59.99806 * 19 18 6 22 22 H 1.09004 * 109.47062 * 299.99591 * 1 2 3 23 23 H 1.08999 * 109.47294 * 59.99662 * 1 2 3 24 24 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47027 * 299.99424 * 4 2 1 26 26 H 1.08999 * 109.47325 * 59.99877 * 4 2 1 27 27 H 1.08998 * 109.46871 * 299.99519 * 5 4 2 28 28 H 1.09004 * 109.47062 * 179.97438 * 5 4 2 29 29 H 1.09005 * 109.47257 * 264.47897 * 9 8 6 30 30 H 1.09000 * 109.47063 * 144.48238 * 9 8 6 31 31 H 1.08993 * 109.47036 * 24.48212 * 9 8 6 32 32 H 0.96996 * 119.99876 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47119 * 180.02562 * 18 6 5 34 34 H 1.09001 * 109.46952 * 299.99557 * 18 6 5 35 35 H 1.08999 * 109.47225 * 60.00185 * 21 19 18 36 36 H 1.08995 * 109.47523 * 180.02562 * 21 19 18 37 37 H 1.09004 * 109.46896 * 300.00259 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0002 7 1 3.7159 -2.4709 0.0000 8 7 5.5445 -1.4433 0.0008 9 6 6.2770 -0.1746 0.0014 10 6 6.2292 -2.6293 0.0006 11 1 5.7671 -3.5196 0.4007 12 6 7.5172 -2.6870 -0.5138 13 7 8.1101 -1.5875 -0.9287 14 14 8.4090 -4.3251 -0.6172 15 1 8.1238 -4.9622 -1.9279 16 1 9.8711 -4.1020 -0.4831 17 1 7.9413 -5.2133 0.4772 18 6 3.5695 -0.7222 1.2494 19 6 2.0396 -0.7216 1.2492 20 1 1.6762 -0.2074 2.1390 21 6 1.5290 -2.1639 1.2489 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6767 -1.7488 -1.2494 26 1 1.6766 -0.2073 -2.1393 27 1 3.9336 0.3058 -1.2488 28 1 3.9333 -1.2359 -2.1389 29 1 6.5447 0.0910 -1.0214 30 1 7.1828 -0.2783 0.5987 31 1 5.6486 0.6075 0.4272 32 1 9.0099 -1.6280 -1.2884 33 1 3.9329 -1.2360 2.1394 34 1 3.9333 0.3054 1.2497 35 1 1.8920 -2.6780 2.1388 36 1 0.4391 -2.1636 1.2483 37 1 1.8924 -2.6777 0.3588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082841887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = -19.044282 kcal Electronic energy + Delta-G solvation = -15089.527445 eV Core-core repulsion = 12865.814608 eV Total energy + Delta-G solvation = -2223.712837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47074 -37.05367 -33.82594 -32.51903 -31.36699 -28.19943 -27.97764 -26.48593 -24.08577 -23.08578 -21.26214 -19.17903 -18.70811 -17.20429 -16.30087 -15.81303 -15.31238 -14.82439 -14.76655 -14.55458 -14.22491 -13.70885 -13.38144 -13.15696 -12.82710 -12.75433 -12.65164 -12.41439 -12.34306 -12.18397 -12.04490 -11.94460 -11.69980 -11.38921 -11.11284 -10.81632 -10.72904 -10.56704 -8.69754 -7.82117 -5.29687 1.44481 1.46084 1.54777 2.49987 3.31343 3.66187 3.85704 3.89941 4.18278 4.33384 4.43521 4.53297 4.59372 4.64548 4.72613 4.82757 4.87431 4.88164 5.02612 5.10674 5.17061 5.19222 5.20208 5.28304 5.36854 5.39183 5.43264 5.52211 5.60020 5.62888 5.72497 5.75769 5.81896 6.37510 7.19143 7.92988 8.37732 9.21483 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050272 B = 0.008296 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.835552 B = 3374.131821 C = 3524.573243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.061 0.939 4 C -0.104 4.104 5 C -0.122 4.122 6 C 0.175 3.825 7 H 0.055 0.945 8 N -0.620 5.620 9 C 0.188 3.812 10 C -0.263 4.263 11 H 0.069 0.931 12 C -0.055 4.055 13 N -0.942 5.942 14 Si 0.969 3.031 15 H -0.285 1.285 16 H -0.293 1.293 17 H -0.269 1.269 18 C -0.118 4.118 19 C -0.076 4.076 20 H 0.077 0.923 21 C -0.148 4.148 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.031 0.969 29 H -0.005 1.005 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.247 0.753 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 2.153 2.577 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.080 0.920 4 C -0.142 4.142 5 C -0.162 4.162 6 C 0.068 3.932 7 H 0.073 0.927 8 N -0.343 5.343 9 C 0.043 3.957 10 C -0.393 4.393 11 H 0.086 0.914 12 C -0.249 4.249 13 N -0.589 5.589 14 Si 0.797 3.203 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.194 1.194 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.095 0.905 21 C -0.205 4.205 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.013 0.987 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.694 2.166 2.533 15.067 hybrid contribution 1.317 -0.666 -0.289 1.504 sum -13.377 1.500 2.244 13.646 Atomic orbital electron populations 1.21834 0.93536 1.02402 1.02063 1.21108 0.96536 0.98655 0.93896 0.92026 1.21572 0.93328 1.01128 0.98130 1.21930 0.96492 0.99552 0.98200 1.20563 0.81919 0.97478 0.93194 0.92664 1.44248 1.01171 1.02363 1.86538 1.20436 0.92932 0.85423 0.96921 1.19594 0.97986 0.88964 1.32728 0.91357 1.25927 0.99387 1.00196 0.99365 1.70280 1.13799 1.27147 1.47698 0.85235 0.77197 0.79814 0.78050 1.21198 1.21988 1.19351 1.21952 0.96046 0.99801 0.97926 1.21064 0.93205 0.97006 0.98260 0.90454 1.21952 1.01514 0.95682 1.01370 0.91957 0.92274 0.91874 0.91507 0.91515 0.93900 0.95027 0.98703 0.96221 0.96271 0.94391 0.93899 0.93406 0.93481 0.90658 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.84 71.98 0.64 -1.94 16 2 C -0.08 -2.03 2.50 -10.79 -0.03 -2.06 16 3 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.10 -2.90 4.93 30.60 0.15 -2.75 16 5 C -0.12 -4.64 5.20 30.60 0.16 -4.48 16 6 C 0.17 7.33 2.31 44.99 0.10 7.44 16 7 H 0.06 2.37 6.17 -2.39 -0.01 2.36 16 8 N -0.62 -32.74 2.82 -702.78 -1.98 -34.72 16 9 C 0.19 9.96 7.97 127.77 1.02 10.98 16 10 C -0.26 -15.07 9.59 84.04 0.81 -14.27 16 11 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 12 C -0.05 -3.17 5.38 84.86 0.46 -2.71 16 13 N -0.94 -57.77 10.13 21.65 0.22 -57.55 16 14 Si 0.97 46.43 29.56 68.60 2.03 48.46 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 16 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C -0.12 -4.19 4.72 30.59 0.14 -4.04 16 19 C -0.08 -2.02 2.72 -10.80 -0.03 -2.05 16 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 21 C -0.15 -3.66 8.15 71.98 0.59 -3.08 16 22 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.08 6.42 -2.39 -0.02 1.07 16 25 H 0.07 1.80 6.43 -2.39 -0.02 1.79 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.68 7.67 -2.39 -0.02 1.67 16 28 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 29 H -0.01 -0.31 7.44 -2.38 -0.02 -0.33 16 30 H 0.02 1.12 7.03 -2.39 -0.02 1.10 16 31 H 0.02 0.88 6.44 -2.39 -0.02 0.87 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.75 6.66 -2.39 -0.02 1.73 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.48 6.42 -2.39 -0.02 1.46 16 37 H 0.05 1.37 4.81 -2.38 -0.01 1.36 16 Total: -1.00 -63.89 272.88 5.29 -58.60 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.02 Total: 4.16 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 4.01 Total: -18.95 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -1.76 Total: -92.27 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -63.89 5.29 -58.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082841887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.559 kcal (2) G-P(sol) polarization free energy of solvation -63.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds