Wall clock time and date at job start Sun Mar 29 2020 21:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47530 * 59.99990 * 6 5 4 9 9 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 10 10 H 1.08996 * 109.47452 * 300.00000 * 9 6 5 11 11 N 1.46909 * 109.47268 * 180.02562 * 9 6 5 12 12 C 1.46892 * 110.99971 * 155.00195 * 11 9 6 13 13 C 1.50697 * 109.47277 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99804 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00366 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99920 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00048 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47216 * 89.99436 * 17 15 13 19 19 H 1.48506 * 109.46827 * 209.99400 * 17 15 13 20 20 H 1.48494 * 109.46998 * 329.99203 * 17 15 13 21 21 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 22 22 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 24 24 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 26 26 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 29 29 H 1.09001 * 109.46322 * 299.99964 * 8 6 5 30 30 H 1.09002 * 109.47347 * 59.99574 * 8 6 5 31 31 H 1.08999 * 109.47550 * 180.02562 * 8 6 5 32 32 H 1.00900 * 110.99685 * 31.05138 * 11 9 6 33 33 H 1.09007 * 109.47347 * 300.00074 * 12 11 9 34 34 H 1.09002 * 109.47282 * 60.00053 * 12 11 9 35 35 H 0.97001 * 120.00107 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47153 * 299.99641 * 21 2 1 37 37 H 1.08996 * 109.46952 * 59.99813 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 1 5.1704 -1.4417 -0.0010 8 6 3.5709 -2.8844 -0.0004 9 6 3.5705 -0.7206 1.2487 10 1 3.9335 0.3072 1.2486 11 7 4.0612 -1.4126 2.4481 12 6 4.1238 -0.4973 3.5953 13 6 4.6309 -1.2408 4.8041 14 1 4.8811 -2.2886 4.7278 15 6 4.7744 -0.5836 6.0076 16 7 4.4692 0.6923 6.1007 17 14 5.4022 -1.5055 7.5061 18 1 6.8831 -1.4106 7.5612 19 1 4.8218 -0.9066 8.7348 20 1 5.0007 -2.9322 7.4137 21 6 2.0400 -0.7214 1.2491 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.6765 -1.7488 -1.2495 26 1 1.6765 -0.2072 -2.1393 27 1 3.9331 -1.2340 -2.1400 28 1 3.9329 0.3071 -1.2499 29 1 2.4809 -2.8847 -0.0002 30 1 3.9342 -3.3982 -0.8905 31 1 3.9342 -3.3980 0.8897 32 1 4.9590 -1.8400 2.2771 33 1 4.7996 0.3268 3.3662 34 1 3.1283 -0.1041 3.8013 35 1 4.5704 1.1547 6.9474 36 1 1.6768 -0.2076 2.1392 37 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082858002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:53 Heat of formation + Delta-G solvation = -35.510956 kcal Electronic energy + Delta-G solvation = -14638.337629 eV Core-core repulsion = 12413.910743 eV Total energy + Delta-G solvation = -2224.426885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22915 -34.73552 -33.08864 -32.08930 -29.17353 -27.66308 -25.97875 -24.78638 -22.37945 -20.88727 -20.37185 -18.29534 -16.35674 -15.34645 -14.77178 -14.43442 -14.27756 -14.10415 -13.57219 -12.91781 -12.62207 -12.31879 -12.15028 -11.78870 -11.63143 -11.37046 -11.25653 -11.06665 -10.80566 -10.70527 -10.62056 -10.39660 -10.16790 -9.85396 -9.74999 -9.44848 -9.06800 -8.44474 -7.19439 -5.99696 -4.01303 3.33549 3.39459 3.44269 4.45601 4.86773 4.92012 5.01136 5.32795 5.35909 5.37072 5.51399 5.60303 5.74576 5.80236 5.81215 5.93241 5.99101 5.99260 6.09358 6.17745 6.27909 6.30136 6.35361 6.42305 6.47695 6.69091 6.72471 6.80843 6.96941 7.35324 7.48980 7.84132 8.19528 8.48997 8.69650 9.08769 9.63488 11.11406 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044475 B = 0.007007 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.422343 B = 3994.858704 C = 4315.797594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.092 4.092 7 H 0.062 0.938 8 C -0.140 4.140 9 C 0.092 3.908 10 H 0.031 0.969 11 N -0.685 5.685 12 C 0.195 3.805 13 C -0.513 4.513 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.099 4.099 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.327 0.673 33 H -0.017 1.017 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 -2.528 -13.770 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.111 4.111 7 H 0.080 0.920 8 C -0.197 4.197 9 C -0.018 4.018 10 H 0.049 0.951 11 N -0.315 5.315 12 C 0.068 3.932 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.137 4.137 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.001 0.999 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.776 -2.627 -13.449 14.512 hybrid contribution 1.141 0.283 0.719 1.378 sum -3.635 -2.344 -12.730 13.445 Atomic orbital electron populations 1.21803 0.95682 1.01510 1.01170 1.21155 0.95036 0.99597 0.95472 0.91754 1.21607 0.95491 1.00711 0.97169 1.21534 0.95823 1.00231 0.97394 1.21264 0.99269 0.95993 0.94593 0.91998 1.21813 1.01455 0.95398 1.01051 1.21435 0.95123 0.95380 0.89893 0.95134 1.60683 1.32117 1.34804 1.03890 1.19570 0.96329 0.90173 0.87101 1.21215 1.43032 0.96735 0.94143 0.92038 1.24994 0.95741 0.94903 0.98991 1.69969 1.48950 1.09039 1.25863 0.86502 0.78795 0.79996 0.82131 1.20773 1.21274 1.19795 1.21579 0.95272 1.00652 0.96241 0.92882 0.92717 0.93295 0.91735 0.92811 0.92453 0.92409 0.92319 0.94168 0.91585 0.85596 0.99887 0.95447 0.92988 0.92032 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.28 2.72 -90.62 -0.25 -1.52 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.35 4.93 -26.73 -0.13 -1.48 16 5 C -0.11 -1.40 5.45 -26.73 -0.15 -1.55 16 6 C -0.09 -1.36 2.57 -90.62 -0.23 -1.59 16 7 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 8 C -0.14 -1.95 8.34 37.16 0.31 -1.64 16 9 C 0.09 1.67 2.19 -67.69 -0.15 1.52 16 10 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 11 N -0.68 -14.85 5.58 -107.97 -0.60 -15.46 16 12 C 0.19 5.21 5.24 -4.98 -0.03 5.19 16 13 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.10 -1.68 4.43 -26.71 -0.12 -1.80 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.81 4.81 -51.93 -0.25 0.56 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.01 7.48 -51.93 -0.39 0.63 16 32 H 0.33 6.85 8.18 -39.29 -0.32 6.52 16 33 H -0.02 -0.48 8.06 -51.92 -0.42 -0.89 16 34 H 0.03 0.79 7.44 -51.93 -0.39 0.40 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 1.18 7.46 -51.93 -0.39 0.80 16 37 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 LS Contribution 283.02 15.07 4.27 4.27 Total: -1.00 -29.58 283.02 -8.01 -37.59 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.57 Total: 1.05 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.82 Total: -17.87 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.13 Total: -42.01 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.58 -8.01 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082858002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.080 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds