Wall clock time and date at job start Sun Mar 29 2020 21:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47530 * 59.99990 * 6 5 4 9 9 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 10 10 H 1.08996 * 109.47452 * 300.00000 * 9 6 5 11 11 N 1.46909 * 109.47268 * 180.02562 * 9 6 5 12 12 C 1.46892 * 110.99971 * 155.00195 * 11 9 6 13 13 C 1.50697 * 109.47277 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99804 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00366 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99920 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00048 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47216 * 89.99436 * 17 15 13 19 19 H 1.48506 * 109.46827 * 209.99400 * 17 15 13 20 20 H 1.48494 * 109.46998 * 329.99203 * 17 15 13 21 21 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 22 22 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 24 24 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 26 26 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 27 27 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 29 29 H 1.09001 * 109.46322 * 299.99964 * 8 6 5 30 30 H 1.09002 * 109.47347 * 59.99574 * 8 6 5 31 31 H 1.08999 * 109.47550 * 180.02562 * 8 6 5 32 32 H 1.00900 * 110.99685 * 31.05138 * 11 9 6 33 33 H 1.09007 * 109.47347 * 300.00074 * 12 11 9 34 34 H 1.09002 * 109.47282 * 60.00053 * 12 11 9 35 35 H 0.97001 * 120.00107 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47153 * 299.99641 * 21 2 1 37 37 H 1.08996 * 109.46952 * 59.99813 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 1 5.1704 -1.4417 -0.0010 8 6 3.5709 -2.8844 -0.0004 9 6 3.5705 -0.7206 1.2487 10 1 3.9335 0.3072 1.2486 11 7 4.0612 -1.4126 2.4481 12 6 4.1238 -0.4973 3.5953 13 6 4.6309 -1.2408 4.8041 14 1 4.8811 -2.2886 4.7278 15 6 4.7744 -0.5836 6.0076 16 7 4.4692 0.6923 6.1007 17 14 5.4022 -1.5055 7.5061 18 1 6.8831 -1.4106 7.5612 19 1 4.8218 -0.9066 8.7348 20 1 5.0007 -2.9322 7.4137 21 6 2.0400 -0.7214 1.2491 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.6765 -1.7488 -1.2495 26 1 1.6765 -0.2072 -2.1393 27 1 3.9331 -1.2340 -2.1400 28 1 3.9329 0.3071 -1.2499 29 1 2.4809 -2.8847 -0.0002 30 1 3.9342 -3.3982 -0.8905 31 1 3.9342 -3.3980 0.8897 32 1 4.9590 -1.8400 2.2771 33 1 4.7996 0.3268 3.3662 34 1 3.1283 -0.1041 3.8013 35 1 4.5704 1.1547 6.9474 36 1 1.6768 -0.2076 2.1392 37 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082858002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:53 Heat of formation + Delta-G solvation = -53.678646 kcal Electronic energy + Delta-G solvation = -14639.125439 eV Core-core repulsion = 12413.910743 eV Total energy + Delta-G solvation = -2225.214695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50979 -36.47065 -34.69217 -33.78220 -30.68908 -28.89176 -27.86006 -25.98045 -24.20855 -22.38645 -21.67391 -19.60535 -18.46887 -16.75980 -16.60115 -16.02228 -15.71001 -15.38271 -14.94936 -14.34404 -14.15159 -13.85990 -13.59658 -13.42597 -12.84713 -12.78311 -12.73440 -12.62577 -12.34177 -12.26663 -12.07846 -11.77985 -11.68136 -11.38106 -11.06920 -10.90661 -10.78053 -10.66535 -9.08537 -8.23860 -6.35674 1.39322 1.41620 1.53510 2.38765 3.08989 3.47866 3.78220 3.82527 4.11255 4.24156 4.30890 4.39516 4.52298 4.63663 4.66052 4.78020 4.83062 4.96260 5.01073 5.01676 5.10848 5.11619 5.17684 5.23612 5.26993 5.30499 5.35528 5.51168 5.52547 5.53955 5.61296 5.74642 6.03287 6.48438 6.74597 6.90559 7.35705 8.87913 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044475 B = 0.007007 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.422343 B = 3994.858704 C = 4315.797594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.055 0.945 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.088 4.088 7 H 0.061 0.939 8 C -0.135 4.135 9 C 0.088 3.912 10 H 0.007 0.993 11 N -0.680 5.680 12 C 0.213 3.787 13 C -0.536 4.536 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.976 3.024 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.264 1.264 21 C -0.094 4.094 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.332 0.668 33 H -0.048 1.048 34 H -0.004 1.004 35 H 0.265 0.735 36 H 0.024 0.976 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -3.927 -15.114 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.073 0.927 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.106 4.106 7 H 0.079 0.921 8 C -0.192 4.192 9 C -0.022 4.022 10 H 0.025 0.975 11 N -0.310 5.310 12 C 0.085 3.915 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.132 4.132 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.149 0.851 33 H -0.030 1.030 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.800 -4.034 -14.820 16.092 hybrid contribution 1.135 0.756 1.113 1.760 sum -3.665 -3.278 -13.707 14.562 Atomic orbital electron populations 1.21778 0.94164 1.02173 1.01739 1.21136 0.96327 0.98822 0.94705 0.92687 1.21595 0.94942 1.01168 0.96733 1.21537 0.96273 0.99997 0.96841 1.21237 0.99238 0.96528 0.93642 0.92093 1.21768 1.01527 0.94492 1.01427 1.21594 0.96022 0.94324 0.90264 0.97541 1.60601 1.32318 1.33856 1.04215 1.19171 0.93497 0.89904 0.88915 1.21572 1.43588 0.97067 0.95200 0.91691 1.26007 0.95580 0.95789 1.02506 1.70109 1.49680 1.10823 1.26984 0.85293 0.78508 0.78731 0.77519 1.19563 1.20654 1.18801 1.21526 0.94222 1.00716 0.96740 0.92164 0.93913 0.91008 0.90897 0.90356 0.89788 0.92799 0.92125 0.91471 0.93519 0.85056 1.03024 0.98587 0.92632 0.95739 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.09 -2.40 2.72 -10.79 -0.03 -2.43 16 3 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -2.25 4.93 30.60 0.15 -2.10 16 5 C -0.11 -2.43 5.45 30.59 0.17 -2.26 16 6 C -0.09 -2.47 2.57 -10.79 -0.03 -2.50 16 7 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 8 C -0.14 -3.48 8.34 71.98 0.60 -2.88 16 9 C 0.09 3.29 2.19 44.93 0.10 3.38 16 10 H 0.01 0.28 7.80 -2.39 -0.02 0.26 16 11 N -0.68 -30.62 5.58 -495.50 -2.76 -33.38 16 12 C 0.21 12.02 5.24 85.56 0.45 12.47 16 13 C -0.54 -31.69 9.32 25.60 0.24 -31.45 16 14 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.94 -58.28 13.29 21.45 0.28 -57.99 16 17 Si 0.98 45.30 29.54 68.60 2.03 47.32 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 21 C -0.09 -3.26 4.43 30.61 0.14 -3.12 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.45 6.43 -2.39 -0.02 1.44 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.54 4.81 -2.39 -0.01 1.52 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.38 7.48 -2.39 -0.02 1.36 16 32 H 0.33 14.25 8.18 -89.69 -0.73 13.52 16 33 H -0.05 -2.93 8.06 -2.38 -0.02 -2.95 16 34 H 0.00 -0.25 7.44 -2.39 -0.02 -0.26 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.02 1.00 7.46 -2.39 -0.02 0.98 16 37 H 0.07 2.35 6.43 -2.39 -0.02 2.33 16 Total: -1.00 -65.43 283.02 2.74 -62.70 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.29 Total: 14.36 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 2.91 Total: -33.01 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -2.48 Total: -91.37 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.43 2.74 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082858002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.019 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds