Wall clock time and date at job start Sun Mar 29 2020 21:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 H 1.09002 * 109.46796 * 176.36325 * 3 2 1 5 5 C 1.50693 * 109.47464 * 56.36610 * 3 2 1 6 6 H 1.08008 * 119.99567 * 239.99901 * 5 3 2 7 7 C 1.37872 * 120.00442 * 59.99021 * 5 3 2 8 8 N 1.31513 * 119.99832 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00285 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46698 * 60.00446 * 9 7 5 11 11 H 1.48495 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47028 * 300.00168 * 9 7 5 13 13 N 1.46900 * 109.47207 * 296.36026 * 3 2 1 14 14 C 1.46910 * 110.99976 * 273.13539 * 13 3 2 15 15 H 1.08993 * 109.47060 * 35.35631 * 14 13 3 16 16 C 1.53001 * 109.47008 * 155.35669 * 14 13 3 17 17 C 1.52998 * 109.47037 * 294.99952 * 16 14 13 18 18 C 1.53005 * 109.46979 * 275.35717 * 14 13 3 19 19 C 1.52998 * 117.49359 * 248.62299 * 18 14 13 20 20 C 1.52998 * 117.49540 * 180.02562 * 18 14 13 21 21 H 1.09002 * 109.47076 * 174.45307 * 1 2 3 22 22 H 1.08998 * 109.46712 * 294.45304 * 1 2 3 23 23 H 1.09004 * 109.46880 * 54.44916 * 1 2 3 24 24 H 1.09004 * 109.46917 * 240.00227 * 2 1 3 25 25 H 1.09002 * 109.46933 * 120.00027 * 2 1 3 26 26 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 27 27 H 1.00897 * 110.99901 * 149.18729 * 13 3 2 28 28 H 1.08994 * 109.46777 * 174.99749 * 16 14 13 29 29 H 1.08998 * 109.46785 * 54.99636 * 16 14 13 30 30 H 1.08999 * 109.47120 * 300.00292 * 17 16 14 31 31 H 1.08994 * 109.47210 * 179.97438 * 17 16 14 32 32 H 1.09006 * 109.47346 * 59.99827 * 17 16 14 33 33 H 1.08999 * 115.54772 * 34.32874 * 18 14 13 34 34 H 1.08994 * 117.50363 * 0.02562 * 19 18 14 35 35 H 1.09001 * 117.49871 * 145.02606 * 19 18 14 36 36 H 1.09004 * 117.49511 * 214.97934 * 20 18 14 37 37 H 1.08999 * 117.50095 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 0.0652 5 6 1.4655 2.1785 1.1829 6 1 0.8521 3.0539 1.0282 7 6 1.7227 1.7342 2.4625 8 7 2.4698 0.6684 2.6508 9 14 1.0099 2.6461 3.9288 10 1 -0.4724 2.6446 3.8396 11 1 1.4315 1.9726 5.1832 12 1 1.5044 4.0464 3.9289 13 7 1.6234 2.1092 -1.2410 14 6 2.5970 1.8761 -2.3162 15 1 3.0086 0.8713 -2.2221 16 6 1.9028 2.0180 -3.6723 17 6 0.8561 0.9129 -3.8275 18 6 3.7272 2.9022 -2.2119 19 6 3.8241 3.9606 -3.3125 20 6 4.8482 2.8262 -3.2504 21 1 -0.3633 -1.0229 -0.0993 22 1 -0.3633 0.4254 0.9355 23 1 -0.3633 0.5975 -0.8361 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.6510 0.3561 3.5511 27 1 1.4803 3.0966 -1.0905 28 1 2.6416 1.9333 -4.4691 29 1 1.4152 2.9911 -3.7307 30 1 1.3437 -0.0602 -3.7689 31 1 0.3613 1.0142 -4.7933 32 1 0.1173 0.9976 -3.0305 33 1 3.9980 3.2020 -1.1996 34 1 3.0825 3.9262 -4.1105 35 1 4.1588 4.9571 -3.0244 36 1 5.8569 3.0760 -2.9213 37 1 4.7808 2.0450 -4.0076 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083056423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:48 Heat of formation + Delta-G solvation = 6.096262 kcal Electronic energy + Delta-G solvation = -14866.580746 eV Core-core repulsion = 12643.958085 eV Total energy + Delta-G solvation = -2222.622661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.44834 -35.46711 -33.08870 -31.44313 -30.07003 -26.47779 -24.56049 -23.10525 -22.52835 -21.69817 -19.53654 -18.44636 -16.27775 -15.52584 -14.98996 -14.49670 -14.14377 -13.62742 -13.11706 -12.76653 -12.35101 -12.04748 -11.77084 -11.54792 -11.25967 -10.99951 -10.86362 -10.65726 -10.57817 -10.42368 -10.35502 -10.21872 -9.78436 -9.66840 -9.42197 -9.26871 -8.72877 -8.42854 -7.13179 -5.98089 -4.02837 3.32183 3.37078 3.39697 4.13543 4.43276 5.08068 5.21839 5.26111 5.34445 5.43056 5.51293 5.68486 5.84520 5.98819 6.05394 6.15918 6.31019 6.33671 6.37531 6.45713 6.59016 6.68049 6.74552 6.77589 6.86372 6.97365 7.29678 7.40946 7.57234 7.80082 7.84937 7.91687 8.31627 8.47711 8.75355 9.07908 9.61609 11.07895 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031904 B = 0.009526 C = 0.008243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.416073 B = 2938.675455 C = 3395.924906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.118 3.882 15 H 0.072 0.928 16 C -0.108 4.108 17 C -0.142 4.142 18 C -0.171 4.171 19 C -0.185 4.185 20 C -0.184 4.184 21 H 0.010 0.990 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.009 0.991 25 H 0.082 0.918 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 2.380 -9.823 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.303 5.303 14 C 0.006 3.994 15 H 0.090 0.910 16 C -0.146 4.146 17 C -0.199 4.199 18 C -0.191 4.191 19 C -0.222 4.222 20 C -0.222 4.222 21 H 0.030 0.970 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.028 0.972 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.455 1.730 -9.843 10.005 hybrid contribution 0.529 1.053 1.225 1.700 sum 0.984 2.783 -8.618 9.110 Atomic orbital electron populations 1.21447 0.97605 0.96969 1.01526 1.21406 0.95021 0.98345 0.99034 1.19103 0.93572 0.91553 0.84932 0.98100 1.21167 1.31471 1.11865 0.90520 0.92503 1.24869 0.95178 0.95023 0.98727 1.69887 1.37936 1.23398 1.21542 0.86681 0.79591 0.79808 0.82030 1.20263 1.21419 1.20476 1.60791 1.44545 1.16639 1.08374 1.21139 0.89076 0.96560 0.92578 0.91015 1.21573 0.97710 0.99154 0.96205 1.21658 0.99629 0.97968 1.00645 1.23382 0.99441 1.01053 0.95252 1.23025 1.02645 0.94119 1.02445 1.22851 0.94711 1.01512 1.03139 0.97048 0.93004 0.93439 0.97214 0.89984 0.93010 0.85154 0.93215 0.92304 0.93717 0.94465 0.90893 0.87757 0.88448 0.89744 0.89619 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.44 37.16 0.35 -2.32 16 2 C -0.10 -2.40 5.56 -26.73 -0.15 -2.55 16 3 C 0.22 5.27 2.10 -68.87 -0.14 5.12 16 4 H 0.00 0.04 7.46 -51.93 -0.39 -0.35 16 5 C -0.51 -13.57 7.26 -34.45 -0.25 -13.82 16 6 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.12 11.36 55.43 0.63 -24.49 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.74 4.81 -100.95 -0.49 -14.23 16 14 C 0.12 2.07 2.18 -67.70 -0.15 1.92 16 15 H 0.07 1.39 7.24 -51.93 -0.38 1.02 16 16 C -0.11 -1.62 4.21 -26.73 -0.11 -1.73 16 17 C -0.14 -2.12 9.80 37.16 0.36 -1.76 16 18 C -0.17 -2.84 5.46 -90.62 -0.50 -3.33 16 19 C -0.19 -2.55 9.57 -26.75 -0.26 -2.81 16 20 C -0.18 -2.58 9.87 -26.75 -0.26 -2.84 16 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.05 1.26 7.33 -51.93 -0.38 0.88 16 23 H 0.05 1.02 7.11 -51.93 -0.37 0.66 16 24 H 0.01 0.21 7.53 -51.93 -0.39 -0.18 16 25 H 0.08 2.21 6.18 -51.93 -0.32 1.89 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.33 6.80 7.93 -39.29 -0.31 6.49 16 28 H 0.05 0.67 6.71 -51.93 -0.35 0.32 16 29 H 0.06 0.86 7.32 -51.93 -0.38 0.48 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.23 7.31 -51.93 -0.38 0.85 16 33 H 0.10 1.98 7.95 -51.93 -0.41 1.57 16 34 H 0.10 1.25 5.88 -51.93 -0.31 0.95 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -26.64 287.90 -8.14 -34.78 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.40 Total: 5.89 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.20 Total: -22.47 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.14 Total: -38.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.64 -8.14 -34.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083056423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.879 kcal (2) G-P(sol) polarization free energy of solvation -26.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds