Wall clock time and date at job start Sun Mar 29 2020 21:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 H 1.09002 * 109.46796 * 176.36325 * 3 2 1 5 5 C 1.50693 * 109.47464 * 56.36610 * 3 2 1 6 6 H 1.08008 * 119.99567 * 239.99901 * 5 3 2 7 7 C 1.37872 * 120.00442 * 59.99021 * 5 3 2 8 8 N 1.31513 * 119.99832 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00285 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46698 * 60.00446 * 9 7 5 11 11 H 1.48495 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47028 * 300.00168 * 9 7 5 13 13 N 1.46900 * 109.47207 * 296.36026 * 3 2 1 14 14 C 1.46910 * 110.99976 * 273.13539 * 13 3 2 15 15 H 1.08993 * 109.47060 * 35.35631 * 14 13 3 16 16 C 1.53001 * 109.47008 * 155.35669 * 14 13 3 17 17 C 1.52998 * 109.47037 * 294.99952 * 16 14 13 18 18 C 1.53005 * 109.46979 * 275.35717 * 14 13 3 19 19 C 1.52998 * 117.49359 * 248.62299 * 18 14 13 20 20 C 1.52998 * 117.49540 * 180.02562 * 18 14 13 21 21 H 1.09002 * 109.47076 * 174.45307 * 1 2 3 22 22 H 1.08998 * 109.46712 * 294.45304 * 1 2 3 23 23 H 1.09004 * 109.46880 * 54.44916 * 1 2 3 24 24 H 1.09004 * 109.46917 * 240.00227 * 2 1 3 25 25 H 1.09002 * 109.46933 * 120.00027 * 2 1 3 26 26 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 27 27 H 1.00897 * 110.99901 * 149.18729 * 13 3 2 28 28 H 1.08994 * 109.46777 * 174.99749 * 16 14 13 29 29 H 1.08998 * 109.46785 * 54.99636 * 16 14 13 30 30 H 1.08999 * 109.47120 * 300.00292 * 17 16 14 31 31 H 1.08994 * 109.47210 * 179.97438 * 17 16 14 32 32 H 1.09006 * 109.47346 * 59.99827 * 17 16 14 33 33 H 1.08999 * 115.54772 * 34.32874 * 18 14 13 34 34 H 1.08994 * 117.50363 * 0.02562 * 19 18 14 35 35 H 1.09001 * 117.49871 * 145.02606 * 19 18 14 36 36 H 1.09004 * 117.49511 * 214.97934 * 20 18 14 37 37 H 1.08999 * 117.50095 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 0.0652 5 6 1.4655 2.1785 1.1829 6 1 0.8521 3.0539 1.0282 7 6 1.7227 1.7342 2.4625 8 7 2.4698 0.6684 2.6508 9 14 1.0099 2.6461 3.9288 10 1 -0.4724 2.6446 3.8396 11 1 1.4315 1.9726 5.1832 12 1 1.5044 4.0464 3.9289 13 7 1.6234 2.1092 -1.2410 14 6 2.5970 1.8761 -2.3162 15 1 3.0086 0.8713 -2.2221 16 6 1.9028 2.0180 -3.6723 17 6 0.8561 0.9129 -3.8275 18 6 3.7272 2.9022 -2.2119 19 6 3.8241 3.9606 -3.3125 20 6 4.8482 2.8262 -3.2504 21 1 -0.3633 -1.0229 -0.0993 22 1 -0.3633 0.4254 0.9355 23 1 -0.3633 0.5975 -0.8361 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.6510 0.3561 3.5511 27 1 1.4803 3.0966 -1.0905 28 1 2.6416 1.9333 -4.4691 29 1 1.4152 2.9911 -3.7307 30 1 1.3437 -0.0602 -3.7689 31 1 0.3613 1.0142 -4.7933 32 1 0.1173 0.9976 -3.0305 33 1 3.9980 3.2020 -1.1996 34 1 3.0825 3.9262 -4.1105 35 1 4.1588 4.9571 -3.0244 36 1 5.8569 3.0760 -2.9213 37 1 4.7808 2.0450 -4.0076 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083056423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:48 Heat of formation + Delta-G solvation = -8.294007 kcal Electronic energy + Delta-G solvation = -14867.204754 eV Core-core repulsion = 12643.958085 eV Total energy + Delta-G solvation = -2223.246670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82901 -37.19725 -34.63767 -33.24167 -31.76773 -28.31358 -26.18988 -24.99669 -23.71164 -22.87880 -21.31736 -20.00682 -18.23799 -16.90772 -16.80323 -15.96510 -15.61566 -15.30714 -14.82398 -14.48464 -13.89033 -13.62969 -13.35451 -13.10072 -12.82007 -12.69763 -12.44921 -12.36760 -12.19438 -11.93133 -11.81854 -11.61478 -11.46392 -11.28080 -11.08666 -10.78459 -10.69552 -10.49150 -8.84936 -8.07166 -6.18436 1.41833 1.42997 1.50014 2.43348 2.94321 3.21661 3.77665 3.87088 4.03365 4.14975 4.28682 4.41579 4.63118 4.71014 4.80457 4.82088 4.86344 4.91950 4.98228 5.02957 5.14231 5.23761 5.28520 5.31921 5.42913 5.44198 5.49712 5.63013 5.65183 5.76324 5.89514 5.97114 6.31001 6.58586 6.88916 7.12151 7.50185 8.97799 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031904 B = 0.009526 C = 0.008243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.416073 B = 2938.675455 C = 3395.924906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C 0.226 3.774 4 H -0.039 1.039 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.667 5.667 14 C 0.120 3.880 15 H 0.047 0.953 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.202 4.202 19 C -0.163 4.163 20 C -0.172 4.172 21 H 0.031 0.969 22 H 0.029 0.971 23 H 0.056 0.944 24 H 0.017 0.983 25 H 0.051 0.949 26 H 0.259 0.741 27 H 0.330 0.670 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 3.283 -11.459 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C 0.118 3.882 4 H -0.021 1.021 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.295 5.295 14 C 0.009 3.991 15 H 0.065 0.935 16 C -0.137 4.137 17 C -0.197 4.197 18 C -0.222 4.222 19 C -0.200 4.200 20 C -0.210 4.210 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.126 2.643 -11.500 11.800 hybrid contribution 0.761 0.764 1.689 2.004 sum 0.635 3.407 -9.810 10.404 Atomic orbital electron populations 1.21298 0.96035 0.98271 1.00628 1.21268 0.96265 0.97867 0.97871 1.18826 0.90980 0.92074 0.86365 1.02108 1.21445 1.31155 1.11851 0.91485 0.92633 1.25602 0.95558 0.95754 1.01319 1.70031 1.39078 1.24694 1.21874 0.85727 0.79000 0.78740 0.78851 1.19686 1.21318 1.19892 1.60736 1.45464 1.16165 1.07176 1.21134 0.89187 0.95641 0.93108 0.93454 1.21522 0.98024 0.99576 0.94622 1.21626 0.99139 0.97692 1.01235 1.23104 1.01170 1.03209 0.94728 1.23118 1.02303 0.93946 1.00611 1.22955 0.94474 1.01935 1.01591 0.94989 0.95211 0.92475 0.96393 0.93035 0.93193 0.85311 0.90912 0.91471 0.94260 0.91921 0.93062 0.91255 0.86750 0.88832 0.88954 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.71 9.44 71.98 0.68 -4.03 16 2 C -0.09 -4.64 5.56 30.60 0.17 -4.47 16 3 C 0.23 11.38 2.10 44.17 0.09 11.47 16 4 H -0.04 -2.22 7.46 -2.39 -0.02 -2.23 16 5 C -0.52 -28.18 7.26 25.60 0.19 -27.99 16 6 H 0.06 2.96 7.59 -2.91 -0.02 2.94 16 7 C 0.02 0.92 5.30 84.65 0.45 1.37 16 8 N -0.92 -53.25 11.36 21.45 0.24 -53.01 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.67 -27.40 4.81 -473.29 -2.28 -29.67 16 14 C 0.12 4.19 2.18 44.92 0.10 4.28 16 15 H 0.05 1.87 7.24 -2.39 -0.02 1.85 16 16 C -0.10 -2.72 4.21 30.59 0.13 -2.59 16 17 C -0.14 -3.86 9.80 71.98 0.71 -3.16 16 18 C -0.20 -6.63 5.46 -10.79 -0.06 -6.69 16 19 C -0.16 -4.06 9.57 30.58 0.29 -3.76 16 20 C -0.17 -4.45 9.87 30.58 0.30 -4.15 16 21 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.03 1.43 7.33 -2.39 -0.02 1.42 16 23 H 0.06 2.42 7.11 -2.38 -0.02 2.41 16 24 H 0.02 0.82 7.53 -2.39 -0.02 0.80 16 25 H 0.05 2.87 6.18 -2.39 -0.01 2.85 16 26 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 27 H 0.33 13.63 7.93 -89.70 -0.71 12.92 16 28 H 0.07 1.69 6.71 -2.39 -0.02 1.67 16 29 H 0.07 1.75 7.32 -2.39 -0.02 1.73 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.64 7.31 -2.38 -0.02 1.62 16 33 H 0.07 2.75 7.95 -2.39 -0.02 2.73 16 34 H 0.11 2.48 5.88 -2.39 -0.01 2.47 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.10 2.41 7.58 -2.39 -0.02 2.40 16 Total: -1.00 -58.04 287.90 3.35 -54.69 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.32 Total: 21.85 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.04 Total: -39.72 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.03 Total: -82.68 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.04 3.35 -54.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083056423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.394 kcal (2) G-P(sol) polarization free energy of solvation -58.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds