Wall clock time and date at job start Sun Mar 29 2020 21:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 H 1.08996 * 109.47160 * 54.33827 * 3 2 1 5 5 C 1.50696 * 109.47508 * 174.34139 * 3 2 1 6 6 H 1.08006 * 120.00053 * 119.99735 * 5 3 2 7 7 C 1.37875 * 119.99833 * 299.72384 * 5 3 2 8 8 N 1.31513 * 120.00199 * 0.27528 * 7 5 3 9 9 Si 1.86805 * 119.99856 * 180.27160 * 7 5 3 10 10 H 1.48495 * 109.47310 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46619 * 120.00152 * 9 7 5 12 12 H 1.48495 * 109.47191 * 239.99758 * 9 7 5 13 13 N 1.46905 * 109.47114 * 294.34185 * 3 2 1 14 14 C 1.46894 * 111.00082 * 161.33072 * 13 3 2 15 15 H 1.08997 * 109.47713 * 18.14261 * 14 13 3 16 16 C 1.53007 * 109.47319 * 258.14004 * 14 13 3 17 17 C 1.52999 * 109.47091 * 65.68559 * 16 14 13 18 18 C 1.53009 * 109.47165 * 138.14302 * 14 13 3 19 19 C 1.52995 * 117.49333 * 248.62123 * 18 14 13 20 20 C 1.52999 * 117.49918 * 179.97438 * 18 14 13 21 21 H 1.09003 * 109.47072 * 303.69652 * 1 2 3 22 22 H 1.09004 * 109.46880 * 63.68862 * 1 2 3 23 23 H 1.08998 * 109.47070 * 183.69325 * 1 2 3 24 24 H 1.09004 * 109.47292 * 240.00085 * 2 1 3 25 25 H 1.08996 * 109.47114 * 119.99703 * 2 1 3 26 26 H 0.96996 * 120.00361 * 180.02562 * 8 7 5 27 27 H 1.00900 * 110.99927 * 285.28561 * 13 3 2 28 28 H 1.08996 * 109.47309 * 185.69049 * 16 14 13 29 29 H 1.09000 * 109.46905 * 305.69223 * 16 14 13 30 30 H 1.08997 * 109.47408 * 301.03256 * 17 16 14 31 31 H 1.09007 * 109.46544 * 61.02503 * 17 16 14 32 32 H 1.08996 * 109.47537 * 181.02338 * 17 16 14 33 33 H 1.08993 * 115.54782 * 34.32768 * 18 14 13 34 34 H 1.08994 * 117.50763 * 359.97438 * 19 18 14 35 35 H 1.09004 * 117.49457 * 145.02380 * 19 18 14 36 36 H 1.08998 * 117.49598 * 214.97930 * 20 18 14 37 37 H 1.09007 * 117.49696 * 359.97303 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 0.8349 5 6 3.5405 1.4448 0.1401 6 1 4.1542 1.8864 -0.6312 7 6 4.1296 0.8883 1.2555 8 7 3.3823 0.3505 2.1947 9 14 5.9892 0.8979 1.4327 10 1 6.5958 1.5578 0.2489 11 1 6.3654 1.6429 2.6610 12 1 6.4845 -0.4986 1.5297 13 7 1.6651 2.0945 -1.2619 14 6 1.7303 3.5568 -1.1386 15 1 2.3359 3.8218 -0.2720 16 6 0.3174 4.1174 -0.9641 17 6 -0.2600 3.6390 0.3695 18 6 2.3609 4.1475 -2.4013 19 6 3.7479 4.7795 -2.2688 20 6 2.5177 5.6680 -2.4678 21 1 -0.3633 0.5702 0.8550 22 1 -0.3633 0.4555 -0.9212 23 1 -0.3633 -1.0255 0.0662 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7967 -0.0407 2.9796 27 1 2.2431 1.7696 -2.0225 28 1 0.3549 5.2067 -0.9740 29 1 -0.3154 3.7682 -1.7801 30 1 -0.2806 2.5494 0.3866 31 1 0.3627 4.0034 1.1866 32 1 -1.2733 4.0234 0.4856 33 1 2.1325 3.6242 -3.3298 34 1 4.2110 4.7750 -1.2821 35 1 4.4324 4.6721 -3.1103 36 1 2.3931 6.1447 -3.4400 37 1 2.1711 6.2475 -1.6121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083056424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:49 Heat of formation + Delta-G solvation = 1.447627 kcal Electronic energy + Delta-G solvation = -14940.800646 eV Core-core repulsion = 12717.976405 eV Total energy + Delta-G solvation = -2222.824241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.12792 -35.51427 -33.05699 -31.47701 -30.26551 -26.68445 -24.76385 -22.69171 -22.00608 -21.16007 -19.74642 -18.95641 -16.59927 -15.68050 -14.81211 -14.20924 -14.04712 -13.33865 -13.04613 -12.77467 -12.42144 -11.96098 -11.80060 -11.32159 -11.20368 -11.18151 -10.93826 -10.86424 -10.61437 -10.42818 -10.22350 -10.00747 -9.86741 -9.62804 -9.47075 -9.17382 -8.95071 -8.31704 -7.17154 -5.95316 -4.08092 3.26723 3.35603 3.38811 4.18952 4.42094 5.01711 5.25631 5.31078 5.32465 5.57339 5.79657 5.90160 5.91571 6.04149 6.09047 6.26446 6.39985 6.44673 6.49357 6.50304 6.55473 6.68163 6.70160 6.73676 6.97027 7.08017 7.19861 7.23232 7.49514 7.67451 7.82609 8.13874 8.25207 8.41568 8.75515 9.06317 9.59525 11.03906 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.012538 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.097551 B = 2232.744650 C = 3072.246359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.212 3.788 4 H 0.041 0.959 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.121 3.879 15 H 0.057 0.943 16 C -0.102 4.102 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.179 4.179 20 C -0.183 4.183 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.028 0.972 25 H 0.090 0.910 26 H 0.259 0.741 27 H 0.326 0.674 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 6.092 -5.916 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.104 3.896 4 H 0.059 0.941 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.310 5.310 14 C 0.011 3.989 15 H 0.075 0.925 16 C -0.140 4.140 17 C -0.210 4.210 18 C -0.167 4.167 19 C -0.216 4.216 20 C -0.221 4.221 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.963 5.961 -5.594 9.084 hybrid contribution 2.171 0.105 0.187 2.182 sum -1.792 6.066 -5.407 8.321 Atomic orbital electron populations 1.21735 0.99046 0.98234 1.00405 1.21515 0.92090 0.99512 1.01573 1.19308 0.92684 0.91088 0.86561 0.94126 1.21980 0.93102 1.37953 1.05013 0.92791 1.24926 0.97602 0.95173 0.95861 1.69883 1.34515 1.38829 1.09233 0.86666 0.86497 0.77683 0.77911 1.19943 1.21151 1.21055 1.60996 1.58615 1.02750 1.08651 1.21006 0.94201 0.89757 0.93972 0.92511 1.21464 0.96832 0.97986 0.97718 1.21864 0.98581 1.03554 0.97044 1.22679 0.99107 0.94450 1.00492 1.22981 0.91112 1.04632 1.02908 1.22877 1.03382 0.93658 1.02188 0.94274 0.93371 0.95770 0.95304 0.89213 0.93052 0.85717 0.93547 0.92417 0.90498 0.93638 0.94504 0.88161 0.88664 0.89580 0.89590 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.96 37.16 0.33 -2.47 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.21 5.10 1.14 -68.86 -0.08 5.02 16 4 H 0.04 1.08 6.19 -51.93 -0.32 0.76 16 5 C -0.54 -14.39 8.09 -34.44 -0.28 -14.67 16 6 H 0.05 1.45 7.81 -52.48 -0.41 1.03 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 9 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.68 -13.96 5.36 -100.95 -0.54 -14.51 16 14 C 0.12 2.25 2.20 -67.71 -0.15 2.10 16 15 H 0.06 1.23 7.08 -51.93 -0.37 0.86 16 16 C -0.10 -1.70 5.53 -26.73 -0.15 -1.85 16 17 C -0.15 -2.69 8.87 37.16 0.33 -2.36 16 18 C -0.15 -2.38 5.01 -90.62 -0.45 -2.84 16 19 C -0.18 -2.78 10.18 -26.71 -0.27 -3.06 16 20 C -0.18 -2.54 9.67 -26.71 -0.26 -2.80 16 21 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 22 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.33 6.73 7.95 -39.29 -0.31 6.42 16 28 H 0.05 0.70 7.10 -51.93 -0.37 0.33 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.49 4.56 -51.93 -0.24 1.26 16 31 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.10 1.56 8.08 -51.93 -0.42 1.14 16 34 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -26.65 288.56 -8.23 -34.89 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.43 Total: 7.33 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.21 Total: -23.91 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.09 Total: -38.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.65 -8.23 -34.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083056424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.334 kcal (2) G-P(sol) polarization free energy of solvation -26.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds