Wall clock time and date at job start Sun Mar 29 2020 21:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 H 1.08996 * 109.47160 * 54.33827 * 3 2 1 5 5 C 1.50696 * 109.47508 * 174.34139 * 3 2 1 6 6 H 1.08006 * 120.00053 * 119.99735 * 5 3 2 7 7 C 1.37875 * 119.99833 * 299.72384 * 5 3 2 8 8 N 1.31513 * 120.00199 * 0.27528 * 7 5 3 9 9 Si 1.86805 * 119.99856 * 180.27160 * 7 5 3 10 10 H 1.48495 * 109.47310 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46619 * 120.00152 * 9 7 5 12 12 H 1.48495 * 109.47191 * 239.99758 * 9 7 5 13 13 N 1.46905 * 109.47114 * 294.34185 * 3 2 1 14 14 C 1.46894 * 111.00082 * 161.33072 * 13 3 2 15 15 H 1.08997 * 109.47713 * 18.14261 * 14 13 3 16 16 C 1.53007 * 109.47319 * 258.14004 * 14 13 3 17 17 C 1.52999 * 109.47091 * 65.68559 * 16 14 13 18 18 C 1.53009 * 109.47165 * 138.14302 * 14 13 3 19 19 C 1.52995 * 117.49333 * 248.62123 * 18 14 13 20 20 C 1.52999 * 117.49918 * 179.97438 * 18 14 13 21 21 H 1.09003 * 109.47072 * 303.69652 * 1 2 3 22 22 H 1.09004 * 109.46880 * 63.68862 * 1 2 3 23 23 H 1.08998 * 109.47070 * 183.69325 * 1 2 3 24 24 H 1.09004 * 109.47292 * 240.00085 * 2 1 3 25 25 H 1.08996 * 109.47114 * 119.99703 * 2 1 3 26 26 H 0.96996 * 120.00361 * 180.02562 * 8 7 5 27 27 H 1.00900 * 110.99927 * 285.28561 * 13 3 2 28 28 H 1.08996 * 109.47309 * 185.69049 * 16 14 13 29 29 H 1.09000 * 109.46905 * 305.69223 * 16 14 13 30 30 H 1.08997 * 109.47408 * 301.03256 * 17 16 14 31 31 H 1.09007 * 109.46544 * 61.02503 * 17 16 14 32 32 H 1.08996 * 109.47537 * 181.02338 * 17 16 14 33 33 H 1.08993 * 115.54782 * 34.32768 * 18 14 13 34 34 H 1.08994 * 117.50763 * 359.97438 * 19 18 14 35 35 H 1.09004 * 117.49457 * 145.02380 * 19 18 14 36 36 H 1.08998 * 117.49598 * 214.97930 * 20 18 14 37 37 H 1.09007 * 117.49696 * 359.97303 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 0.8349 5 6 3.5405 1.4448 0.1401 6 1 4.1542 1.8864 -0.6312 7 6 4.1296 0.8883 1.2555 8 7 3.3823 0.3505 2.1947 9 14 5.9892 0.8979 1.4327 10 1 6.5958 1.5578 0.2489 11 1 6.3654 1.6429 2.6610 12 1 6.4845 -0.4986 1.5297 13 7 1.6651 2.0945 -1.2619 14 6 1.7303 3.5568 -1.1386 15 1 2.3359 3.8218 -0.2720 16 6 0.3174 4.1174 -0.9641 17 6 -0.2600 3.6390 0.3695 18 6 2.3609 4.1475 -2.4013 19 6 3.7479 4.7795 -2.2688 20 6 2.5177 5.6680 -2.4678 21 1 -0.3633 0.5702 0.8550 22 1 -0.3633 0.4555 -0.9212 23 1 -0.3633 -1.0255 0.0662 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7967 -0.0407 2.9796 27 1 2.2431 1.7696 -2.0225 28 1 0.3549 5.2067 -0.9740 29 1 -0.3154 3.7682 -1.7801 30 1 -0.2806 2.5494 0.3866 31 1 0.3627 4.0034 1.1866 32 1 -1.2733 4.0234 0.4856 33 1 2.1325 3.6242 -3.3298 34 1 4.2110 4.7750 -1.2821 35 1 4.4324 4.6721 -3.1103 36 1 2.3931 6.1447 -3.4400 37 1 2.1711 6.2475 -1.6121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083056424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:49 Heat of formation + Delta-G solvation = -13.100584 kcal Electronic energy + Delta-G solvation = -14941.431503 eV Core-core repulsion = 12717.976405 eV Total energy + Delta-G solvation = -2223.455099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57443 -37.15332 -34.72258 -33.36171 -31.89652 -28.50686 -26.46701 -24.45022 -23.26982 -22.47763 -21.50777 -20.52688 -18.60405 -17.15428 -16.71067 -15.78711 -15.40660 -15.07971 -14.69609 -14.47944 -13.88985 -13.55186 -13.30061 -13.16279 -13.07657 -12.78522 -12.59616 -12.40348 -12.25396 -12.16620 -11.76288 -11.51445 -11.43356 -11.23256 -11.02108 -10.98307 -10.60469 -10.37787 -8.95404 -8.01151 -6.23025 1.34451 1.37888 1.47149 2.40432 2.97401 3.17315 3.63652 3.93975 4.10753 4.25159 4.44587 4.50136 4.59739 4.67282 4.69457 4.79911 4.82650 4.96322 5.02028 5.06317 5.18162 5.26941 5.27551 5.30892 5.33972 5.44590 5.49129 5.58763 5.66147 5.71430 5.87446 6.17650 6.28786 6.48780 6.94085 7.09691 7.48306 8.93683 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.012538 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.097551 B = 2232.744650 C = 3072.246359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.670 5.670 14 C 0.122 3.878 15 H 0.018 0.982 16 C -0.095 4.095 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.191 4.191 20 C -0.156 4.156 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 7.093 -7.410 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.031 0.969 5 C -0.591 4.591 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.299 5.299 14 C 0.012 3.988 15 H 0.036 0.964 16 C -0.133 4.133 17 C -0.209 4.209 18 C -0.180 4.180 19 C -0.228 4.228 20 C -0.193 4.193 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.332 6.972 -7.098 10.852 hybrid contribution 2.276 -0.178 0.659 2.377 sum -2.056 6.794 -6.439 9.584 Atomic orbital electron populations 1.21577 0.96364 0.99404 1.00682 1.21386 0.94472 0.98762 0.99814 1.19034 0.91128 0.91269 0.87231 0.96913 1.22267 0.94578 1.37430 1.04781 0.93511 1.25606 1.01469 0.95137 0.95785 1.70006 1.35965 1.39531 1.09602 0.85748 0.81912 0.77651 0.77761 1.19593 1.21006 1.20669 1.60955 1.57996 1.04033 1.06908 1.20995 0.95238 0.88577 0.93998 0.96362 1.21422 0.95363 0.99139 0.97369 1.21827 0.99854 1.02126 0.97071 1.22584 0.99524 0.96472 0.99383 1.22985 0.91594 1.06013 1.02253 1.22970 1.00641 0.91969 1.03735 0.94864 0.92244 0.93998 0.95580 0.92315 0.93102 0.85760 0.91447 0.91390 0.92677 0.95415 0.91926 0.87090 0.91110 0.88061 0.86754 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 8.96 71.98 0.64 -4.31 16 2 C -0.11 -5.08 5.45 30.59 0.17 -4.91 16 3 C 0.22 10.93 1.14 44.17 0.05 10.98 16 4 H 0.01 0.71 6.19 -2.39 -0.01 0.70 16 5 C -0.55 -29.92 8.09 25.60 0.21 -29.71 16 6 H 0.05 2.55 7.81 -2.91 -0.02 2.52 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -52.49 11.30 21.45 0.24 -52.25 16 9 Si 0.94 44.03 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.67 -27.42 5.36 -473.30 -2.54 -29.95 16 14 C 0.12 4.49 2.20 44.92 0.10 4.59 16 15 H 0.02 0.81 7.08 -2.39 -0.02 0.80 16 16 C -0.09 -3.01 5.53 30.60 0.17 -2.84 16 17 C -0.15 -5.21 8.87 71.98 0.64 -4.57 16 18 C -0.16 -4.88 5.01 -10.79 -0.05 -4.93 16 19 C -0.19 -5.69 10.18 30.61 0.31 -5.38 16 20 C -0.16 -3.85 9.67 30.61 0.30 -3.55 16 21 H 0.03 1.35 7.13 -2.39 -0.02 1.33 16 22 H 0.06 2.24 7.88 -2.39 -0.02 2.22 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.06 3.20 5.95 -2.39 -0.01 3.19 16 26 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.33 13.32 7.95 -89.69 -0.71 12.61 16 28 H 0.07 1.86 7.10 -2.39 -0.02 1.84 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.13 4.56 -2.39 -0.01 2.12 16 31 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16 34 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 35 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.28 7.58 -2.38 -0.02 2.26 16 Total: -1.00 -57.56 288.56 3.02 -54.54 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.31 Total: 24.73 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 2.98 Total: -43.11 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.29 Total: -82.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -57.56 3.02 -54.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083056424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.435 kcal (2) G-P(sol) polarization free energy of solvation -57.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds