Wall clock time and date at job start Sun Mar 29 2020 21:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46995 * 2 1 4 4 H 1.09004 * 109.47210 * 305.00226 * 3 2 1 5 5 N 1.46893 * 109.47121 * 65.00296 * 3 2 1 6 6 C 1.46906 * 111.00121 * 207.02231 * 5 3 2 7 7 H 1.08999 * 109.47066 * 324.90325 * 6 5 3 8 8 C 1.50707 * 109.47077 * 84.90247 * 6 5 3 9 9 H 1.07999 * 119.99841 * 0.02562 * 8 6 5 10 10 C 1.37871 * 119.99601 * 179.97438 * 8 6 5 11 11 N 1.31519 * 120.00194 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99595 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47224 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.46891 * 120.00467 * 12 10 8 15 15 H 1.48500 * 109.47339 * 239.99944 * 12 10 8 16 16 C 1.53002 * 109.47298 * 204.90246 * 6 5 3 17 17 C 1.52998 * 109.47202 * 65.19644 * 16 6 5 18 18 C 1.53000 * 109.47328 * 185.00412 * 3 2 1 19 19 C 1.53000 * 117.49971 * 64.72124 * 18 3 2 20 20 C 1.52999 * 60.03474 * 252.50339 * 19 18 3 21 21 H 1.08997 * 109.46670 * 299.99834 * 1 2 3 22 22 H 1.09002 * 109.47171 * 60.00006 * 1 2 3 23 23 H 1.08993 * 109.46995 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47330 * 240.00507 * 2 1 3 25 25 H 1.08997 * 109.47617 * 120.00130 * 2 1 3 26 26 H 1.00901 * 111.00524 * 83.06825 * 5 3 2 27 27 H 0.96999 * 119.99203 * 179.97438 * 11 10 8 28 28 H 1.08994 * 109.47000 * 185.19729 * 16 6 5 29 29 H 1.08999 * 109.47085 * 305.20103 * 16 6 5 30 30 H 1.09007 * 109.46954 * 294.29867 * 17 16 6 31 31 H 1.09002 * 109.47054 * 54.28957 * 17 16 6 32 32 H 1.08994 * 109.47416 * 174.29824 * 17 16 6 33 33 H 1.09000 * 115.55121 * 210.39874 * 18 3 2 34 34 H 1.09002 * 117.50150 * 0.02562 * 19 18 3 35 35 H 1.09000 * 117.49614 * 145.00052 * 19 18 3 36 36 H 1.08997 * 117.50390 * 107.50122 * 20 19 18 37 37 H 1.08996 * 117.49846 * 252.52580 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6514 2.0993 1.2552 6 6 1.5259 3.5515 1.0727 7 1 2.2753 3.8941 0.3592 8 6 0.1498 3.8751 0.5502 9 1 -0.5605 3.0813 0.3720 10 6 -0.2025 5.1844 0.3007 11 7 0.6624 6.1510 0.5182 12 14 -1.9079 5.5854 -0.3476 13 1 -2.6848 4.3299 -0.5068 14 1 -2.6045 6.4798 0.6117 15 1 -1.7904 6.2655 -1.6625 16 6 1.7403 4.2546 2.4145 17 6 3.1800 4.0328 2.8823 18 6 3.5648 1.4445 -0.1258 19 6 4.1673 0.9018 -1.4233 20 6 4.2755 0.0887 -0.1317 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.3040 1.8828 1.9937 27 1 0.4145 7.0722 0.3423 28 1 1.5565 5.3227 2.2985 29 1 1.0511 3.8455 3.1533 30 1 3.3337 2.9749 3.0956 31 1 3.8692 4.3494 2.0996 32 1 3.3626 4.6156 3.7850 33 1 4.0752 2.2784 0.3559 34 1 3.4774 0.5437 -2.1874 35 1 5.0741 1.3788 -1.7952 36 1 3.6568 -0.8046 -0.0459 37 1 5.2534 0.0311 0.3463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083056426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:51 Heat of formation + Delta-G solvation = -8.752912 kcal Electronic energy + Delta-G solvation = -14862.719085 eV Core-core repulsion = 12639.452516 eV Total energy + Delta-G solvation = -2223.266569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81520 -37.19137 -34.57566 -33.65087 -31.58312 -28.67146 -26.32627 -24.45736 -23.73096 -22.81829 -21.40396 -20.29611 -18.25237 -17.04048 -16.72111 -15.98002 -15.52291 -15.43743 -14.88198 -14.58803 -13.79602 -13.53036 -13.36140 -13.24181 -13.05214 -12.78227 -12.50152 -12.41183 -11.98343 -11.96674 -11.85353 -11.62677 -11.51708 -11.42807 -11.18967 -10.86158 -10.67723 -10.41135 -8.85584 -8.03868 -6.14807 1.38838 1.41187 1.52756 2.44744 2.94801 3.21007 3.75957 3.87545 4.06284 4.15293 4.29302 4.44916 4.50909 4.58538 4.66967 4.71754 4.81512 4.85965 4.95407 5.04055 5.10149 5.15152 5.22009 5.28814 5.30656 5.39054 5.43312 5.48930 5.65399 5.68070 5.80726 5.95050 6.42150 6.61262 7.01095 7.11209 7.54226 8.99226 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.010432 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.511620 B = 2683.497670 C = 3158.128252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C 0.125 3.875 4 H 0.042 0.958 5 N -0.674 5.674 6 C 0.229 3.771 7 H -0.034 1.034 8 C -0.502 4.502 9 H 0.050 0.950 10 C 0.007 3.993 11 N -0.921 5.921 12 Si 0.951 3.049 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.283 1.283 16 C -0.121 4.121 17 C -0.137 4.137 18 C -0.199 4.199 19 C -0.178 4.178 20 C -0.159 4.159 21 H 0.046 0.954 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.327 0.673 27 H 0.258 0.742 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -10.775 -0.355 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C 0.014 3.986 4 H 0.060 0.940 5 N -0.304 5.304 6 C 0.120 3.880 7 H -0.017 1.017 8 C -0.541 4.541 9 H 0.069 0.931 10 C -0.191 4.191 11 N -0.562 5.562 12 Si 0.777 3.223 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.210 1.210 16 C -0.160 4.160 17 C -0.194 4.194 18 C -0.219 4.219 19 C -0.216 4.216 20 C -0.196 4.196 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.615 -10.701 -0.447 11.662 hybrid contribution 0.061 1.259 -0.494 1.353 sum 4.676 -9.442 -0.940 10.578 Atomic orbital electron populations 1.21597 0.96276 1.00573 1.01130 1.21515 0.95778 0.94577 1.01666 1.21016 0.89710 0.95448 0.92421 0.93981 1.60692 1.52615 1.10690 1.06397 1.18875 0.93757 0.83297 0.92036 1.01664 1.21535 0.99558 0.91826 1.41215 0.93126 1.25664 1.00453 0.96501 0.96454 1.70019 1.35939 0.99820 1.50471 0.85614 0.80814 0.78009 0.77837 1.19478 1.20688 1.20954 1.21592 0.94777 1.02666 0.96988 1.21732 0.96781 1.00934 0.99972 1.23133 0.96609 0.98400 1.03787 1.22955 1.02784 1.04450 0.91385 1.23167 1.01889 0.94369 1.00135 0.93479 0.94976 0.91837 0.91020 0.91112 0.85501 0.93287 0.91656 0.94598 0.92311 0.94767 0.92609 0.90344 0.88546 0.88700 0.86929 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.80 71.98 0.71 -3.75 16 2 C -0.10 -2.91 4.20 30.60 0.13 -2.78 16 3 C 0.12 4.62 2.15 44.92 0.10 4.72 16 4 H 0.04 1.89 7.61 -2.38 -0.02 1.87 16 5 N -0.67 -28.15 5.50 -473.29 -2.61 -30.76 16 6 C 0.23 11.57 1.84 44.17 0.08 11.65 16 7 H -0.03 -1.95 7.72 -2.39 -0.02 -1.97 16 8 C -0.50 -28.31 8.50 25.60 0.22 -28.09 16 9 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 10 C 0.01 0.38 5.29 84.65 0.45 0.83 16 11 N -0.92 -54.04 11.29 21.45 0.24 -53.80 16 12 Si 0.95 45.10 29.54 68.60 2.03 47.12 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 16 C -0.12 -5.83 5.36 30.59 0.16 -5.66 16 17 C -0.14 -5.22 9.63 71.98 0.69 -4.53 16 18 C -0.20 -6.39 5.51 -10.77 -0.06 -6.45 16 19 C -0.18 -4.71 9.91 30.59 0.30 -4.41 16 20 C -0.16 -3.78 9.52 30.62 0.29 -3.49 16 21 H 0.05 1.75 7.75 -2.39 -0.02 1.73 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.83 6.79 -2.39 -0.02 1.82 16 25 H 0.07 1.92 7.55 -2.39 -0.02 1.90 16 26 H 0.33 12.43 6.29 -89.69 -0.56 11.87 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.06 3.58 5.95 -2.39 -0.01 3.56 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.96 6.63 -2.38 -0.02 1.95 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.10 2.45 7.89 -2.39 -0.02 2.44 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.11 2.39 5.84 -2.39 -0.01 2.38 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -60.42 290.67 3.19 -57.23 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.46 Total: 22.17 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.07 Total: -41.96 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.36 Total: -84.55 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -60.42 3.19 -57.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083056426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.473 kcal (2) G-P(sol) polarization free energy of solvation -60.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds