Wall clock time and date at job start Sun Mar 29 2020 21:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86799 * 120.00144 * 2 1 4 4 H 1.48508 * 109.47244 * 270.00300 * 3 2 1 5 5 H 1.48497 * 109.47129 * 30.00380 * 3 2 1 6 6 H 1.48505 * 109.47203 * 150.00329 * 3 2 1 7 7 C 1.40044 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99969 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99845 * 5.41547 * 9 7 2 11 11 N 1.34779 * 120.00022 * 185.41539 * 9 7 2 12 12 C 1.46063 * 119.80529 * 175.35369 * 11 9 7 13 13 C 1.52455 * 111.46000 * 117.06620 * 12 11 9 14 14 C 1.52902 * 110.24583 * 62.69202 * 13 12 11 15 15 N 1.46695 * 109.03636 * 271.28735 * 14 13 12 16 16 C 1.34256 * 120.37446 * 71.26556 * 15 14 13 17 17 O 1.21279 * 120.34727 * 182.88425 * 16 15 14 18 18 C 1.46661 * 119.80801 * 355.32860 * 11 9 7 19 19 H 0.97006 * 120.00000 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.06727 * 237.54924 * 12 11 9 21 21 H 1.09000 * 109.07636 * 356.57310 * 12 11 9 22 22 H 1.09001 * 109.35336 * 182.84000 * 13 12 11 23 23 H 1.09000 * 109.34921 * 302.40652 * 13 12 11 24 24 H 1.08994 * 109.57117 * 151.40931 * 14 13 12 25 25 H 1.09003 * 109.60068 * 31.18364 * 14 13 12 26 26 H 0.97002 * 119.81242 * 251.24028 * 15 14 13 27 27 H 1.08994 * 109.60359 * 21.78758 * 18 11 9 28 28 H 1.09003 * 109.59535 * 142.26297 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0622 -2.4828 -0.0995 11 7 1.9445 -3.6451 0.1091 12 6 1.2051 -4.9007 0.2110 13 6 1.4936 -5.8156 -0.9739 14 6 2.9730 -6.2012 -0.9968 15 7 3.7171 -5.1978 -1.7658 16 6 3.9112 -3.9667 -1.2667 17 8 4.4810 -3.1218 -1.9241 18 6 3.4110 -3.6444 0.1248 19 1 -0.4850 0.8401 0.0004 20 1 1.4920 -5.4091 1.1316 21 1 0.1374 -4.6838 0.2419 22 1 0.8880 -6.7179 -0.8893 23 1 1.2403 -5.2985 -1.8994 24 1 3.0883 -7.1786 -1.4651 25 1 3.3571 -6.2378 0.0227 26 1 4.0713 -5.4253 -2.6397 27 1 3.7730 -2.6610 0.4248 28 1 3.7695 -4.3981 0.8259 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083748133.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:40 Heat of formation + Delta-G solvation = -98.438513 kcal Electronic energy + Delta-G solvation = -14592.195249 eV Core-core repulsion = 12027.947520 eV Total energy + Delta-G solvation = -2564.247729 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.19623 -39.28689 -37.28972 -35.22498 -34.63563 -32.65802 -28.74464 -28.35875 -26.34192 -23.25564 -21.17074 -20.91246 -18.90088 -18.15467 -17.80197 -17.42542 -16.43342 -16.09278 -15.42165 -15.08876 -14.65627 -14.51584 -14.22725 -13.72782 -13.28308 -13.20600 -12.92994 -12.78399 -12.25907 -12.15997 -12.05378 -11.83103 -11.08746 -10.96326 -10.07003 -9.85442 -9.22441 -8.34091 -6.87759 1.36198 1.37759 1.50775 1.54090 2.22396 2.36442 2.48555 2.87495 3.49356 3.77468 4.02612 4.08856 4.18085 4.48154 4.57223 4.58315 4.88506 4.94014 5.03169 5.33923 5.35165 5.67241 5.96737 6.08334 6.22753 6.37676 6.84900 7.20928 7.32336 8.38495 8.61086 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.039503 B = 0.011333 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.629571 B = 2470.004012 C = 2994.913288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.031 3.969 3 Si 0.989 3.011 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.248 1.248 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.540 3.460 10 O -0.624 6.624 11 N -0.634 5.634 12 C 0.106 3.894 13 C -0.151 4.151 14 C 0.113 3.887 15 N -0.717 5.717 16 C 0.501 3.499 17 O -0.594 6.594 18 C 0.108 3.892 19 H 0.275 0.725 20 H 0.088 0.912 21 H 0.051 0.949 22 H 0.116 0.884 23 H 0.034 0.966 24 H 0.129 0.871 25 H 0.095 0.905 26 H 0.402 0.598 27 H 0.098 0.902 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -12.441 1.221 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.171 1.171 7 C -0.604 4.604 8 H 0.103 0.897 9 C 0.347 3.653 10 O -0.511 6.511 11 N -0.372 5.372 12 C -0.017 4.017 13 C -0.191 4.191 14 C -0.010 4.010 15 N -0.369 5.369 16 C 0.286 3.714 17 O -0.473 6.473 18 C -0.019 4.019 19 H 0.085 0.915 20 H 0.106 0.894 21 H 0.069 0.931 22 H 0.134 0.866 23 H 0.053 0.947 24 H 0.147 0.853 25 H 0.113 0.887 26 H 0.238 0.762 27 H 0.116 0.884 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.140 -11.912 1.056 13.928 hybrid contribution 0.023 0.814 -0.605 1.015 sum 7.163 -11.098 0.451 13.216 Atomic orbital electron populations 1.70156 1.09289 1.28989 1.36405 1.26906 0.95519 1.04779 0.91191 0.85139 0.79128 0.75613 0.79225 1.19449 1.18914 1.17115 1.21507 0.94627 0.90271 1.53972 0.89663 1.18589 0.86570 0.84240 0.75900 1.90539 1.16331 1.87195 1.56989 1.47640 1.04619 1.06544 1.78354 1.21265 0.97065 0.84395 0.98925 1.22316 0.98730 1.00412 0.97620 1.21914 0.89101 0.91618 0.98398 1.46077 1.56312 1.12129 1.22417 1.21859 0.77139 0.81922 0.90466 1.90676 1.45305 1.48551 1.62794 1.21723 0.81791 1.05430 0.92931 0.91465 0.89390 0.93064 0.86584 0.94693 0.85331 0.88653 0.76218 0.88404 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.28 11.84 21.83 0.26 -51.02 15 2 C 0.03 1.82 5.50 85.30 0.47 2.29 15 3 Si 0.99 43.45 29.56 68.60 2.03 45.48 15 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 6 H -0.25 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.57 -33.63 8.77 24.83 0.22 -33.41 15 8 H 0.09 4.75 5.79 -2.91 -0.02 4.73 15 9 C 0.54 31.91 7.59 86.36 0.66 32.57 15 10 O -0.62 -42.08 14.35 -4.30 -0.06 -42.14 15 11 N -0.63 -28.13 2.68 -831.82 -2.23 -30.36 15 12 C 0.11 3.68 5.91 86.28 0.51 4.19 15 13 C -0.15 -3.84 5.91 30.38 0.18 -3.66 15 14 C 0.11 2.03 6.41 86.31 0.55 2.59 15 15 N -0.72 -19.03 5.29 -462.77 -2.45 -21.48 15 16 C 0.50 18.75 7.55 87.94 0.66 19.42 15 17 O -0.59 -27.90 17.95 -3.03 -0.05 -27.96 15 18 C 0.11 3.96 5.41 85.80 0.46 4.43 15 19 H 0.28 15.59 8.29 -92.70 -0.77 14.82 15 20 H 0.09 2.33 8.08 -2.39 -0.02 2.31 15 21 H 0.05 2.18 6.86 -2.39 -0.02 2.16 15 22 H 0.12 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.03 1.16 8.04 -2.39 -0.02 1.14 15 24 H 0.13 1.23 8.14 -2.39 -0.02 1.21 15 25 H 0.10 1.40 6.72 -2.39 -0.02 1.39 15 26 H 0.40 9.35 8.93 -92.71 -0.83 8.53 15 27 H 0.10 4.05 5.56 -2.39 -0.01 4.04 15 28 H 0.13 3.24 7.18 -2.39 -0.02 3.22 15 Total: -1.00 -85.67 237.78 1.57 -84.10 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.37 Total: 14.97 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 3.71 Total: 28.41 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -4.42 Total: -102.86 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -0.12 Total: -70.10 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -85.67 1.57 -84.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083748133.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.341 kcal (2) G-P(sol) polarization free energy of solvation -85.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds