Wall clock time and date at job start Sun Mar 29 2020 21:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47179 * 2 1 4 4 N 1.46904 * 109.47102 * 120.00363 * 2 1 3 5 5 C 1.46900 * 110.99669 * 169.07306 * 4 2 1 6 6 C 1.50694 * 109.47116 * 293.95033 * 5 4 2 7 7 H 1.07996 * 120.00616 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99936 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99648 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00104 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47165 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47066 * 119.99877 * 10 8 6 13 13 H 1.48499 * 109.47546 * 239.99986 * 10 8 6 14 14 C 1.46900 * 110.99662 * 293.02400 * 4 2 1 15 15 C 1.53005 * 109.46917 * 160.08995 * 14 4 2 16 16 C 1.53787 * 113.61335 * 272.78666 * 15 14 4 17 17 C 1.53954 * 87.01619 * 220.04976 * 16 15 14 18 18 C 1.53773 * 87.11520 * 25.36247 * 17 16 15 19 19 H 1.09003 * 109.46671 * 300.06703 * 1 2 3 20 20 H 1.08994 * 109.47233 * 60.06832 * 1 2 3 21 21 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46952 * 239.99664 * 2 1 3 23 23 H 1.08999 * 109.46932 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47133 * 300.00421 * 3 2 1 25 25 H 1.09000 * 109.47000 * 60.00221 * 3 2 1 26 26 H 1.09000 * 109.47089 * 53.95807 * 5 4 2 27 27 H 1.09009 * 109.46848 * 173.94805 * 5 4 2 28 28 H 0.97002 * 119.99380 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.47190 * 280.08729 * 14 4 2 30 30 H 1.09001 * 109.47103 * 40.09494 * 14 4 2 31 31 H 1.08995 * 112.85111 * 43.97653 * 15 14 4 32 32 H 1.09001 * 113.61343 * 334.56192 * 16 15 14 33 33 H 1.08997 * 113.61456 * 105.47086 * 16 15 14 34 34 H 1.09006 * 113.53679 * 270.80859 * 17 16 15 35 35 H 1.09000 * 113.66818 * 139.93401 * 17 16 15 36 36 H 1.09006 * 113.61586 * 220.09673 * 18 17 16 37 37 H 1.09002 * 113.69519 * 89.19766 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4648 -0.9414 1.1105 6 6 3.7387 -1.9178 -0.0042 7 1 2.9211 -2.3143 -0.5879 8 6 5.0331 -2.3059 -0.2782 9 7 6.0287 -1.8235 0.4330 10 14 5.3726 -3.5168 -1.6594 11 1 4.0917 -3.9071 -2.3016 12 1 6.2590 -2.8818 -2.6676 13 1 6.0369 -4.7245 -1.1069 14 6 1.6895 0.0629 2.4152 15 6 1.7498 -0.8692 3.6270 16 6 0.4307 -1.6112 3.8998 17 6 0.6955 -1.3658 5.3964 18 6 1.5342 -0.1498 4.9690 19 1 -0.3633 0.5149 0.8894 20 1 -0.3633 0.5127 -0.8905 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 3.9831 -0.0041 0.9081 27 1 3.8206 -1.3571 2.0533 28 1 6.9392 -2.0969 0.2404 29 1 2.4059 0.8741 2.5447 30 1 0.6849 0.4762 2.3245 31 1 2.6233 -1.5212 3.6165 32 1 -0.4492 -1.0911 3.5211 33 1 0.4555 -2.6638 3.6179 34 1 1.2800 -2.1546 5.8701 35 1 -0.1986 -1.1026 5.9616 36 1 2.4486 -0.0244 5.5489 37 1 0.9579 0.7714 4.8828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083838962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:56 Heat of formation + Delta-G solvation = 8.842469 kcal Electronic energy + Delta-G solvation = -14762.608988 eV Core-core repulsion = 12540.105411 eV Total energy + Delta-G solvation = -2222.503576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82435 -36.87490 -32.74039 -30.92211 -28.21584 -26.55603 -25.53317 -25.14777 -22.47375 -21.86949 -18.99945 -18.52474 -16.17694 -15.34539 -15.18584 -14.61755 -14.06528 -13.73462 -13.29810 -12.88827 -12.69191 -12.10303 -12.05045 -11.68744 -11.59951 -11.32921 -11.11788 -10.86781 -10.63204 -10.58212 -10.44606 -10.17066 -9.96762 -9.76308 -9.72267 -9.51344 -9.01712 -8.38392 -7.05827 -5.98183 -3.98276 3.32932 3.40464 3.45405 4.46178 4.83513 5.03231 5.13823 5.19508 5.36996 5.44545 5.60464 5.81106 5.90779 5.92767 6.04603 6.05668 6.11320 6.18007 6.21789 6.26141 6.27785 6.34136 6.45157 6.51198 6.58571 6.72482 6.85144 6.96372 7.01396 7.42468 7.50584 7.88150 8.20790 8.34483 8.66287 9.10359 9.65458 11.12653 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.009329 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.558365 B = 3000.795409 C = 3509.659406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 C -0.180 4.180 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.064 3.936 15 C -0.098 4.098 16 C -0.125 4.125 17 C -0.144 4.144 18 C -0.140 4.140 19 H 0.045 0.955 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.045 0.955 26 H -0.007 1.007 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 3.874 4.791 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.239 4.239 4 N -0.251 5.251 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.065 4.065 15 C -0.116 4.116 16 C -0.162 4.162 17 C -0.182 4.182 18 C -0.178 4.178 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.011 0.989 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.757 3.399 4.828 11.404 hybrid contribution 0.854 0.179 -0.755 1.154 sum -8.903 3.577 4.073 10.424 Atomic orbital electron populations 1.21866 0.96334 1.01517 1.00031 1.21573 0.93570 0.91870 0.95852 1.22437 1.02361 0.98727 1.00373 1.62286 1.19141 1.44184 0.99533 1.19758 0.80797 0.95384 0.97525 1.21229 0.92130 1.25043 1.15712 0.91937 1.24984 0.96267 0.96709 0.96741 1.69975 0.99233 1.44467 1.40243 0.86499 0.78220 0.81014 0.82031 1.19698 1.21204 1.21110 1.22041 0.99092 0.94328 0.91017 1.22511 0.98639 0.97677 0.92817 1.22846 0.97799 1.00917 0.94677 1.22848 0.99637 0.98528 0.97165 1.22944 0.99770 0.97282 0.97844 0.93566 0.93526 0.92386 0.89161 0.92036 0.93495 0.93634 0.98918 0.95239 0.93122 0.95830 0.92157 0.88734 0.90876 0.91662 0.90612 0.92288 0.92035 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.18 37.16 0.34 -1.89 16 2 C 0.08 1.56 2.77 -67.71 -0.19 1.37 16 3 C -0.18 -3.24 8.52 37.16 0.32 -2.92 16 4 N -0.53 -11.30 4.37 -228.08 -1.00 -12.30 16 5 C 0.19 4.94 4.43 -4.98 -0.02 4.92 16 6 C -0.50 -14.13 8.36 -34.44 -0.29 -14.42 16 7 H 0.06 1.75 7.19 -52.49 -0.38 1.38 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.06 1.16 3.39 -3.82 -0.01 1.15 16 15 C -0.10 -1.67 3.76 -89.80 -0.34 -2.00 16 16 C -0.12 -1.87 7.65 -25.82 -0.20 -2.06 16 17 C -0.14 -1.87 8.09 -25.83 -0.21 -2.08 16 18 C -0.14 -1.97 7.65 -25.92 -0.20 -2.16 16 19 H 0.05 0.69 6.29 -51.93 -0.33 0.36 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.09 1.97 6.63 -51.93 -0.34 1.62 16 23 H 0.06 1.26 6.61 -51.93 -0.34 0.91 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.76 6.74 -51.93 -0.35 0.41 16 26 H -0.01 -0.19 6.45 -51.93 -0.33 -0.53 16 27 H 0.03 0.82 6.64 -51.92 -0.34 0.48 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.45 7.33 -51.93 -0.38 0.07 16 30 H 0.06 1.00 5.59 -51.93 -0.29 0.71 16 31 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 32 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 285.32 15.07 4.30 4.30 Total: -1.00 -28.93 285.32 -8.24 -37.18 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.37 Total: -1.21 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -0.89 Total: -18.65 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.26 Total: -38.43 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.93 -8.24 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083838962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.020 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds