Wall clock time and date at job start Sun Mar 29 2020 21:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47179 * 2 1 4 4 N 1.46904 * 109.47102 * 120.00363 * 2 1 3 5 5 C 1.46900 * 110.99669 * 169.07306 * 4 2 1 6 6 C 1.50694 * 109.47116 * 293.95033 * 5 4 2 7 7 H 1.07996 * 120.00616 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99936 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99648 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00104 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47165 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47066 * 119.99877 * 10 8 6 13 13 H 1.48499 * 109.47546 * 239.99986 * 10 8 6 14 14 C 1.46900 * 110.99662 * 293.02400 * 4 2 1 15 15 C 1.53005 * 109.46917 * 160.08995 * 14 4 2 16 16 C 1.53787 * 113.61335 * 272.78666 * 15 14 4 17 17 C 1.53954 * 87.01619 * 220.04976 * 16 15 14 18 18 C 1.53773 * 87.11520 * 25.36247 * 17 16 15 19 19 H 1.09003 * 109.46671 * 300.06703 * 1 2 3 20 20 H 1.08994 * 109.47233 * 60.06832 * 1 2 3 21 21 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46952 * 239.99664 * 2 1 3 23 23 H 1.08999 * 109.46932 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47133 * 300.00421 * 3 2 1 25 25 H 1.09000 * 109.47000 * 60.00221 * 3 2 1 26 26 H 1.09000 * 109.47089 * 53.95807 * 5 4 2 27 27 H 1.09009 * 109.46848 * 173.94805 * 5 4 2 28 28 H 0.97002 * 119.99380 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.47190 * 280.08729 * 14 4 2 30 30 H 1.09001 * 109.47103 * 40.09494 * 14 4 2 31 31 H 1.08995 * 112.85111 * 43.97653 * 15 14 4 32 32 H 1.09001 * 113.61343 * 334.56192 * 16 15 14 33 33 H 1.08997 * 113.61456 * 105.47086 * 16 15 14 34 34 H 1.09006 * 113.53679 * 270.80859 * 17 16 15 35 35 H 1.09000 * 113.66818 * 139.93401 * 17 16 15 36 36 H 1.09006 * 113.61586 * 220.09673 * 18 17 16 37 37 H 1.09002 * 113.69519 * 89.19766 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4648 -0.9414 1.1105 6 6 3.7387 -1.9178 -0.0042 7 1 2.9211 -2.3143 -0.5879 8 6 5.0331 -2.3059 -0.2782 9 7 6.0287 -1.8235 0.4330 10 14 5.3726 -3.5168 -1.6594 11 1 4.0917 -3.9071 -2.3016 12 1 6.2590 -2.8818 -2.6676 13 1 6.0369 -4.7245 -1.1069 14 6 1.6895 0.0629 2.4152 15 6 1.7498 -0.8692 3.6270 16 6 0.4307 -1.6112 3.8998 17 6 0.6955 -1.3658 5.3964 18 6 1.5342 -0.1498 4.9690 19 1 -0.3633 0.5149 0.8894 20 1 -0.3633 0.5127 -0.8905 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 3.9831 -0.0041 0.9081 27 1 3.8206 -1.3571 2.0533 28 1 6.9392 -2.0969 0.2404 29 1 2.4059 0.8741 2.5447 30 1 0.6849 0.4762 2.3245 31 1 2.6233 -1.5212 3.6165 32 1 -0.4492 -1.0911 3.5211 33 1 0.4555 -2.6638 3.6179 34 1 1.2800 -2.1546 5.8701 35 1 -0.1986 -1.1026 5.9616 36 1 2.4486 -0.0244 5.5489 37 1 0.9579 0.7714 4.8828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083838962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:55 Heat of formation + Delta-G solvation = -8.388127 kcal Electronic energy + Delta-G solvation = -14763.356163 eV Core-core repulsion = 12540.105411 eV Total energy + Delta-G solvation = -2223.250751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22087 -38.35479 -34.88052 -32.53543 -29.99683 -27.97486 -27.27262 -26.33970 -24.31483 -23.38574 -20.28463 -20.11548 -18.33280 -16.98558 -16.51889 -16.38034 -15.77780 -15.20946 -14.69850 -14.60068 -14.12475 -13.99930 -13.26451 -13.20662 -13.02366 -12.92058 -12.68321 -12.54715 -12.49255 -12.20622 -11.96620 -11.71461 -11.56925 -11.25246 -11.17658 -10.97972 -10.81077 -10.58417 -8.82703 -8.18989 -6.27825 1.38633 1.39382 1.52906 2.40113 3.12940 3.31701 3.85019 3.92610 3.97996 4.13512 4.16032 4.36078 4.54535 4.58399 4.70926 4.80636 4.82038 4.87081 4.93127 4.95336 4.99797 5.04235 5.12846 5.17495 5.24678 5.27249 5.29761 5.46536 5.51417 5.58984 5.69733 5.73202 6.12849 6.49162 6.78610 6.90774 7.41410 8.92066 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.009329 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.558365 B = 3000.795409 C = 3509.659406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.171 4.171 4 N -0.534 5.534 5 C 0.210 3.790 6 C -0.517 4.517 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.068 3.932 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.131 4.131 19 H 0.062 0.938 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.024 0.976 24 H 0.072 0.928 25 H 0.061 0.939 26 H -0.037 1.037 27 H -0.001 1.001 28 H 0.262 0.738 29 H 0.010 0.990 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 4.161 4.712 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.036 4.036 3 C -0.230 4.230 4 N -0.257 5.257 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.205 1.205 14 C -0.060 4.060 15 C -0.134 4.134 16 C -0.159 4.159 17 C -0.169 4.169 18 C -0.169 4.169 19 H 0.081 0.919 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.080 0.920 26 H -0.019 1.019 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.928 3.692 4.752 13.360 hybrid contribution 1.519 0.125 -0.723 1.687 sum -10.409 3.817 4.029 11.796 Atomic orbital electron populations 1.21759 0.92786 1.01906 1.02082 1.21673 0.96261 0.92003 0.93686 1.22330 0.99942 0.98271 1.02427 1.62234 1.15766 1.45994 1.01733 1.19333 0.83629 0.93362 0.95318 1.21516 0.92352 1.25440 1.16228 0.92222 1.25899 0.96009 0.98576 0.99335 1.70105 0.99710 1.45859 1.41965 0.85384 0.78330 0.78458 0.78757 1.18759 1.20418 1.20507 1.22127 0.99908 0.93936 0.90044 1.22519 0.98531 0.98124 0.94223 1.22854 0.96799 0.99898 0.96320 1.22786 1.00355 0.97708 0.96006 1.22937 1.00280 0.98357 0.95336 0.91907 0.91019 0.92854 0.92228 0.95657 0.90902 0.92017 1.01900 0.98301 0.92876 0.97225 0.89360 0.92813 0.89218 0.93053 0.90760 0.89537 0.92216 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.18 71.98 0.66 -3.06 16 2 C 0.07 2.79 2.77 44.92 0.12 2.91 16 3 C -0.17 -6.04 8.52 71.98 0.61 -5.43 16 4 N -0.53 -23.32 4.37 -875.51 -3.82 -27.15 16 5 C 0.21 11.50 4.43 85.55 0.38 11.88 16 6 C -0.52 -30.10 8.36 25.60 0.21 -29.89 16 7 H 0.06 3.43 7.19 -2.91 -0.02 3.41 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 10 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.07 2.46 3.39 86.31 0.29 2.75 16 15 C -0.12 -3.94 3.76 -10.26 -0.04 -3.97 16 16 C -0.12 -3.43 7.65 31.18 0.24 -3.19 16 17 C -0.13 -3.09 8.09 31.18 0.25 -2.84 16 18 C -0.13 -3.45 7.65 31.12 0.24 -3.21 16 19 H 0.06 1.62 6.29 -2.39 -0.02 1.61 16 20 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 2.64 6.63 -2.39 -0.02 2.63 16 23 H 0.02 1.05 6.61 -2.39 -0.02 1.03 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.06 1.95 6.74 -2.39 -0.02 1.94 16 26 H -0.04 -2.18 6.45 -2.39 -0.02 -2.20 16 27 H 0.00 -0.06 6.64 -2.38 -0.02 -0.08 16 28 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.01 0.37 7.33 -2.39 -0.02 0.35 16 30 H 0.09 2.69 5.59 -2.39 -0.01 2.68 16 31 H 0.05 2.27 6.79 -2.39 -0.02 2.25 16 32 H 0.09 2.24 7.90 -2.39 -0.02 2.22 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -64.73 285.32 2.94 -61.79 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.01 Total: 8.96 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.44 Total: -33.63 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.54 Total: -84.59 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -64.73 2.94 -61.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083838962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.405 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds