Wall clock time and date at job start Sun Mar 29 2020 21:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47207 * 120.00138 * 2 1 3 5 5 H 1.09006 * 109.47233 * 300.00159 * 4 2 1 6 6 C 1.53000 * 109.47198 * 59.99916 * 4 2 1 7 7 N 1.46904 * 109.47533 * 180.02562 * 4 2 1 8 8 C 1.46896 * 111.00224 * 154.99890 * 7 4 2 9 9 C 1.53001 * 109.47039 * 174.72862 * 8 7 4 10 10 C 1.50704 * 115.54874 * 39.57422 * 9 8 7 11 11 H 1.08001 * 120.00186 * 265.28011 * 10 9 8 12 12 C 1.37882 * 120.00011 * 85.28079 * 10 9 8 13 13 N 1.31513 * 120.00081 * 353.39665 * 12 10 9 14 14 Si 1.86793 * 119.99966 * 173.39749 * 12 10 9 15 15 H 1.48498 * 109.47309 * 0.02562 * 14 12 10 16 16 H 1.48511 * 109.47062 * 119.99912 * 14 12 10 17 17 H 1.48499 * 109.47654 * 239.99812 * 14 12 10 18 18 C 1.52996 * 117.49943 * 253.86581 * 9 8 7 19 19 C 1.52999 * 117.50054 * 185.24090 * 9 8 7 20 20 H 1.08997 * 109.47245 * 299.99889 * 1 2 3 21 21 H 1.09002 * 109.47356 * 60.00326 * 1 2 3 22 22 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47245 * 240.00111 * 2 1 3 24 24 H 1.08997 * 109.46976 * 59.99946 * 3 2 1 25 25 H 1.08998 * 109.47185 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47378 * 299.99644 * 3 2 1 27 27 H 1.08998 * 109.47185 * 300.00394 * 6 4 2 28 28 H 1.08997 * 109.46976 * 60.00197 * 6 4 2 29 29 H 1.09006 * 109.47223 * 180.02562 * 6 4 2 30 30 H 1.00899 * 110.99720 * 31.03996 * 7 4 2 31 31 H 1.08996 * 109.47226 * 294.72953 * 8 7 4 32 32 H 1.08999 * 109.47132 * 54.73111 * 8 7 4 33 33 H 0.96995 * 120.00611 * 185.04970 * 13 12 10 34 34 H 1.08998 * 117.50044 * 0.02562 * 18 9 8 35 35 H 1.09003 * 117.49634 * 145.01931 * 18 9 8 36 36 H 1.08998 * 117.50001 * 214.98258 * 19 9 8 37 37 H 1.08997 * 117.49387 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5300 -2.1638 1.2492 7 7 3.5090 -0.7208 1.2496 8 6 4.0352 -0.8403 2.6158 9 6 5.5590 -0.9685 2.5661 10 6 6.2512 -0.1017 1.5459 11 1 6.4894 -0.5005 0.5709 12 6 6.5804 1.2006 1.8573 13 7 6.1770 1.7273 2.9928 14 14 7.5993 2.2167 0.6663 15 1 7.9238 1.3990 -0.5301 16 1 6.8267 3.4152 0.2514 17 1 8.8570 2.6440 1.3303 18 6 6.1617 -2.3460 2.8489 19 6 6.2896 -1.2276 3.8852 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 0.4400 -2.1638 1.2492 28 1 1.8933 -2.6776 0.3592 29 1 1.8930 -2.6775 2.1394 30 1 3.8704 0.1036 0.7937 31 1 3.7636 0.0463 3.1887 32 1 3.6116 -1.7245 3.0922 33 1 6.3452 2.6641 3.1799 34 1 5.4727 -3.1611 3.0700 35 1 7.0591 -2.6256 2.2969 36 1 7.2711 -0.7715 4.0149 37 1 5.6847 -1.3064 4.7884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:14 Heat of formation + Delta-G solvation = 4.227509 kcal Electronic energy + Delta-G solvation = -14773.767321 eV Core-core repulsion = 12551.063625 eV Total energy + Delta-G solvation = -2222.703696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.83573 -36.20376 -32.42079 -31.86943 -29.26970 -26.80443 -25.44712 -24.37023 -21.84820 -20.94666 -19.42456 -18.77946 -15.89892 -15.47698 -14.63965 -14.48095 -13.86184 -13.66046 -13.32982 -12.86134 -12.45148 -12.09028 -11.93154 -11.74071 -11.43603 -11.31951 -11.01959 -10.96308 -10.76703 -10.52243 -10.39389 -10.32144 -10.05324 -9.90166 -9.29664 -8.73240 -8.38902 -7.99979 -7.25615 -5.98364 -4.02473 3.28672 3.38226 3.42935 4.43016 4.94915 5.16714 5.23147 5.30346 5.42146 5.55330 5.79055 5.87464 5.90357 5.94715 6.10853 6.14914 6.25692 6.26101 6.29822 6.45243 6.51357 6.60844 6.62952 6.68694 6.75267 6.87807 6.91859 7.06868 7.20093 7.52694 7.58600 7.93292 8.22219 8.54203 8.62207 9.00956 9.61250 11.09676 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.011026 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.076138 B = 2538.906897 C = 3304.750007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.153 4.153 4 C 0.084 3.916 5 H 0.031 0.969 6 C -0.137 4.137 7 N -0.673 5.673 8 C 0.109 3.891 9 C 0.052 3.948 10 C -0.481 4.481 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.882 5.882 14 Si 0.884 3.116 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.208 4.208 19 C -0.164 4.164 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.354 0.646 31 H 0.025 0.975 32 H 0.035 0.965 33 H 0.257 0.743 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.650 -2.450 -3.382 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.211 4.211 4 C -0.027 4.027 5 H 0.049 0.951 6 C -0.195 4.195 7 N -0.308 5.308 8 C -0.021 4.021 9 C 0.051 3.949 10 C -0.519 4.519 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.519 5.519 14 Si 0.712 3.288 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.245 4.245 19 C -0.202 4.202 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.177 0.823 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.524 -2.950 -3.378 9.632 hybrid contribution 0.414 1.567 -0.069 1.622 sum -8.110 -1.383 -3.447 8.920 Atomic orbital electron populations 1.21868 0.95705 1.01488 1.01170 1.21237 0.95066 0.96146 0.99065 1.21902 1.02206 0.95872 1.01082 1.21493 0.90472 0.95047 0.95638 0.95122 1.21827 0.98817 0.96835 1.02000 1.60507 1.03395 1.47722 1.19205 1.21369 0.95477 0.97216 0.88003 1.18799 0.89736 0.91836 0.94542 1.20454 1.36725 0.95975 0.98724 0.92018 1.25005 0.95680 0.97936 0.94914 1.70009 1.46332 1.12564 1.23006 0.86660 0.80521 0.80194 0.81423 1.19622 1.21180 1.21136 1.22980 1.02761 0.92948 1.05807 1.22519 1.02186 1.02489 0.93047 0.93072 0.93151 0.92506 0.90700 0.93066 0.91486 0.93084 0.93419 0.92422 0.93237 0.82283 0.95668 0.94611 0.93280 0.91943 0.90815 0.90311 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.84 37.16 0.33 -1.43 16 2 C -0.10 -1.43 2.64 -90.62 -0.24 -1.67 16 3 C -0.15 -2.37 8.96 37.16 0.33 -2.03 16 4 C 0.08 1.44 2.23 -67.71 -0.15 1.29 16 5 H 0.03 0.56 7.86 -51.93 -0.41 0.15 16 6 C -0.14 -2.09 9.06 37.16 0.34 -1.75 16 7 N -0.67 -14.02 6.07 -106.73 -0.65 -14.66 16 8 C 0.11 2.49 5.58 -3.83 -0.02 2.47 16 9 C 0.05 1.28 1.76 -155.66 -0.27 1.01 16 10 C -0.48 -12.89 7.47 -34.44 -0.26 -13.15 16 11 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 12 C 0.07 1.80 5.39 -17.82 -0.10 1.71 16 13 N -0.88 -24.68 12.92 55.43 0.72 -23.96 16 14 Si 0.88 20.93 29.55 -169.99 -5.02 15.90 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.21 -4.74 9.88 -26.73 -0.26 -5.00 16 19 C -0.16 -3.98 9.46 -26.73 -0.25 -4.23 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.19 6.21 -51.93 -0.32 0.86 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.79 7.39 -51.93 -0.38 0.40 16 30 H 0.35 7.86 5.14 -39.29 -0.20 7.66 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 33 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -27.21 293.34 -7.64 -34.85 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.55 Total: 6.24 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -0.56 Total: -22.80 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.07 Total: -38.62 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.21 -7.64 -34.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.081 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds