Wall clock time and date at job start Sun Mar 29 2020 21:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47207 * 120.00138 * 2 1 3 5 5 H 1.09006 * 109.47233 * 300.00159 * 4 2 1 6 6 C 1.53000 * 109.47198 * 59.99916 * 4 2 1 7 7 N 1.46904 * 109.47533 * 180.02562 * 4 2 1 8 8 C 1.46896 * 111.00224 * 154.99890 * 7 4 2 9 9 C 1.53001 * 109.47039 * 174.72862 * 8 7 4 10 10 C 1.50704 * 115.54874 * 39.57422 * 9 8 7 11 11 H 1.08001 * 120.00186 * 265.28011 * 10 9 8 12 12 C 1.37882 * 120.00011 * 85.28079 * 10 9 8 13 13 N 1.31513 * 120.00081 * 353.39665 * 12 10 9 14 14 Si 1.86793 * 119.99966 * 173.39749 * 12 10 9 15 15 H 1.48498 * 109.47309 * 0.02562 * 14 12 10 16 16 H 1.48511 * 109.47062 * 119.99912 * 14 12 10 17 17 H 1.48499 * 109.47654 * 239.99812 * 14 12 10 18 18 C 1.52996 * 117.49943 * 253.86581 * 9 8 7 19 19 C 1.52999 * 117.50054 * 185.24090 * 9 8 7 20 20 H 1.08997 * 109.47245 * 299.99889 * 1 2 3 21 21 H 1.09002 * 109.47356 * 60.00326 * 1 2 3 22 22 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47245 * 240.00111 * 2 1 3 24 24 H 1.08997 * 109.46976 * 59.99946 * 3 2 1 25 25 H 1.08998 * 109.47185 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47378 * 299.99644 * 3 2 1 27 27 H 1.08998 * 109.47185 * 300.00394 * 6 4 2 28 28 H 1.08997 * 109.46976 * 60.00197 * 6 4 2 29 29 H 1.09006 * 109.47223 * 180.02562 * 6 4 2 30 30 H 1.00899 * 110.99720 * 31.03996 * 7 4 2 31 31 H 1.08996 * 109.47226 * 294.72953 * 8 7 4 32 32 H 1.08999 * 109.47132 * 54.73111 * 8 7 4 33 33 H 0.96995 * 120.00611 * 185.04970 * 13 12 10 34 34 H 1.08998 * 117.50044 * 0.02562 * 18 9 8 35 35 H 1.09003 * 117.49634 * 145.01931 * 18 9 8 36 36 H 1.08998 * 117.50001 * 214.98258 * 19 9 8 37 37 H 1.08997 * 117.49387 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5300 -2.1638 1.2492 7 7 3.5090 -0.7208 1.2496 8 6 4.0352 -0.8403 2.6158 9 6 5.5590 -0.9685 2.5661 10 6 6.2512 -0.1017 1.5459 11 1 6.4894 -0.5005 0.5709 12 6 6.5804 1.2006 1.8573 13 7 6.1770 1.7273 2.9928 14 14 7.5993 2.2167 0.6663 15 1 7.9238 1.3990 -0.5301 16 1 6.8267 3.4152 0.2514 17 1 8.8570 2.6440 1.3303 18 6 6.1617 -2.3460 2.8489 19 6 6.2896 -1.2276 3.8852 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 0.4400 -2.1638 1.2492 28 1 1.8933 -2.6776 0.3592 29 1 1.8930 -2.6775 2.1394 30 1 3.8704 0.1036 0.7937 31 1 3.7636 0.0463 3.1887 32 1 3.6116 -1.7245 3.0922 33 1 6.3452 2.6641 3.1799 34 1 5.4727 -3.1611 3.0700 35 1 7.0591 -2.6256 2.2969 36 1 7.2711 -0.7715 4.0149 37 1 5.6847 -1.3064 4.7884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:14 Heat of formation + Delta-G solvation = -10.755907 kcal Electronic energy + Delta-G solvation = -14774.417050 eV Core-core repulsion = 12551.063625 eV Total energy + Delta-G solvation = -2223.353426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36152 -37.91096 -34.01086 -33.82550 -30.61440 -28.07441 -27.41130 -25.98409 -23.22847 -22.83228 -21.11016 -20.34980 -17.87952 -16.94373 -16.59795 -16.03910 -15.47483 -15.16543 -14.67795 -14.58666 -13.94421 -13.66556 -13.19251 -13.11282 -12.94765 -12.89541 -12.83189 -12.70320 -12.31408 -12.26591 -11.96542 -11.75188 -11.58300 -11.22476 -11.13013 -10.73491 -10.38272 -9.90788 -8.95875 -8.05818 -6.14917 1.39179 1.43799 1.53940 2.44432 3.21291 3.40855 3.69021 3.92391 4.05364 4.20971 4.38580 4.54323 4.61080 4.66674 4.73898 4.77995 4.83775 4.89992 4.97756 5.00958 5.06793 5.09086 5.10428 5.16246 5.26405 5.29686 5.37994 5.50579 5.57773 5.65624 5.67048 5.82040 6.44568 6.63409 6.82933 6.93968 7.51290 9.01795 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.011026 C = 0.008471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.076138 B = 2538.906897 C = 3304.750007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.151 4.151 4 C 0.079 3.921 5 H 0.019 0.981 6 C -0.130 4.130 7 N -0.677 5.677 8 C 0.123 3.877 9 C 0.024 3.976 10 C -0.487 4.487 11 H 0.050 0.950 12 C 0.026 3.974 13 N -0.909 5.909 14 Si 0.942 3.058 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.287 1.287 18 C -0.186 4.186 19 C -0.169 4.169 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.343 0.657 31 H -0.005 1.005 32 H 0.048 0.952 33 H 0.257 0.743 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 -3.043 -4.416 11.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.031 4.031 5 H 0.037 0.963 6 C -0.188 4.188 7 N -0.311 5.311 8 C -0.007 4.007 9 C 0.024 3.976 10 C -0.525 4.525 11 H 0.069 0.931 12 C -0.174 4.174 13 N -0.547 5.547 14 Si 0.769 3.231 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.213 1.213 18 C -0.223 4.223 19 C -0.207 4.207 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.165 0.835 31 H 0.013 0.987 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.691 -3.561 -4.420 11.231 hybrid contribution 0.764 1.728 0.255 1.906 sum -8.926 -1.834 -4.165 10.020 Atomic orbital electron populations 1.21820 0.93099 1.02644 1.02039 1.21216 0.97136 0.95093 0.97634 1.21880 1.00284 0.96829 1.01868 1.21671 0.88187 0.96775 0.96448 0.96286 1.21781 1.00578 0.94964 1.01489 1.60543 1.05845 1.47055 1.17636 1.21145 0.94389 0.96263 0.88906 1.18997 0.90861 0.93250 0.94536 1.20577 1.36773 0.96522 0.98657 0.93138 1.25600 0.96521 0.98911 0.96325 1.70111 1.47451 1.12717 1.24457 0.85746 0.78889 0.78862 0.79629 1.19219 1.20644 1.21300 1.22978 1.02731 0.92578 1.04047 1.22429 1.01190 1.03535 0.93576 0.93050 0.91492 0.91201 0.90746 0.93698 0.94381 0.90848 0.90567 0.92433 0.94184 0.83515 0.98731 0.93359 0.93406 0.89560 0.90826 0.92502 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.84 71.98 0.64 -2.32 16 2 C -0.09 -2.58 2.64 -10.80 -0.03 -2.61 16 3 C -0.15 -4.56 8.96 71.98 0.64 -3.92 16 4 C 0.08 2.63 2.23 44.91 0.10 2.73 16 5 H 0.02 0.68 7.86 -2.38 -0.02 0.66 16 6 C -0.13 -3.69 9.06 71.98 0.65 -3.04 16 7 N -0.68 -28.15 6.07 -491.57 -2.98 -31.13 16 8 C 0.12 5.64 5.58 86.30 0.48 6.13 16 9 C 0.02 1.21 1.76 -52.93 -0.09 1.11 16 10 C -0.49 -26.36 7.47 25.60 0.19 -26.17 16 11 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 12 C 0.03 1.42 5.39 84.66 0.46 1.88 16 13 N -0.91 -51.72 12.92 21.45 0.28 -51.44 16 14 Si 0.94 43.33 29.55 68.60 2.03 45.36 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 18 C -0.19 -8.28 9.88 30.59 0.30 -7.97 16 19 C -0.17 -8.20 9.46 30.59 0.29 -7.91 16 20 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 1.32 6.43 -2.39 -0.02 1.30 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.36 6.21 -2.39 -0.01 1.34 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.72 6.43 -2.39 -0.02 1.70 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.19 7.39 -2.38 -0.02 1.18 16 30 H 0.34 15.51 5.14 -89.69 -0.46 15.05 16 31 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 33 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 34 H 0.09 3.41 8.08 -2.39 -0.02 3.39 16 35 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -57.63 293.34 3.51 -54.12 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.55 Total: 25.18 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 3.63 Total: -42.09 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.71 Total: -82.57 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -57.63 3.51 -54.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.369 kcal (2) G-P(sol) polarization free energy of solvation -57.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds