Wall clock time and date at job start Sun Mar 29 2020 21:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46828 * 2 1 4 4 C 1.46904 * 111.00130 * 167.32279 * 3 2 1 5 5 C 1.52998 * 109.47345 * 198.31008 * 4 3 2 6 6 C 1.50699 * 115.55055 * 65.90659 * 5 4 3 7 7 H 1.08000 * 119.99727 * 156.84641 * 6 5 4 8 8 C 1.37871 * 120.00094 * 336.84749 * 6 5 4 9 9 N 1.31516 * 120.00210 * 38.41392 * 8 6 5 10 10 Si 1.86804 * 119.99872 * 218.41646 * 8 6 5 11 11 H 1.48494 * 109.47188 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47055 * 119.99926 * 10 8 6 13 13 H 1.48498 * 109.46826 * 239.99676 * 10 8 6 14 14 C 1.53000 * 117.49622 * 280.23465 * 5 4 3 15 15 C 1.52996 * 117.49802 * 211.58010 * 5 4 3 16 16 C 1.46897 * 111.00240 * 291.28028 * 3 2 1 17 17 C 1.53006 * 109.46959 * 325.81262 * 16 3 2 18 18 C 1.52996 * 109.47629 * 85.81422 * 16 3 2 19 19 H 1.08994 * 109.47630 * 85.91771 * 1 2 3 20 20 H 1.08999 * 109.46813 * 205.92212 * 1 2 3 21 21 H 1.09001 * 109.47157 * 325.91900 * 1 2 3 22 22 H 1.08998 * 109.47378 * 240.00396 * 2 1 3 23 23 H 1.08996 * 109.47363 * 119.99982 * 2 1 3 24 24 H 1.08995 * 109.46959 * 318.31052 * 4 3 2 25 25 H 1.09000 * 109.46809 * 78.30571 * 4 3 2 26 26 H 0.97002 * 120.00570 * 184.38451 * 9 8 6 27 27 H 1.08996 * 117.50322 * 0.02562 * 14 5 4 28 28 H 1.09002 * 117.49580 * 145.02215 * 14 5 4 29 29 H 1.09004 * 117.50105 * 214.98032 * 15 5 4 30 30 H 1.09000 * 117.49880 * 359.97153 * 15 5 4 31 31 H 1.09008 * 109.47089 * 205.82025 * 16 3 2 32 32 H 1.08999 * 109.46916 * 59.99954 * 17 16 3 33 33 H 1.09001 * 109.47336 * 180.02562 * 17 16 3 34 34 H 1.09003 * 109.47124 * 300.00264 * 17 16 3 35 35 H 1.09003 * 109.46709 * 66.56844 * 18 16 3 36 36 H 1.08999 * 109.47527 * 186.56890 * 18 16 3 37 37 H 1.09005 * 109.47120 * 306.57095 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4566 1.4355 0.3010 5 6 3.8364 2.8511 0.7399 6 6 3.2340 3.3114 2.0423 7 1 3.7094 4.0985 2.6088 8 6 2.0761 2.7277 2.5107 9 7 1.8867 1.4342 2.3665 10 14 0.7761 3.7741 3.3501 11 1 1.2271 5.1884 3.3871 12 1 -0.4988 3.6801 2.5944 13 1 0.5668 3.2853 4.7367 14 6 4.0373 3.9002 -0.3555 15 6 5.2453 3.3417 0.4007 16 6 1.7258 2.0473 -1.2779 17 6 1.8183 1.0269 -2.4142 18 6 0.3143 2.6359 -1.2347 19 1 -0.3634 0.0732 -1.0250 20 1 -0.3633 -0.9243 0.4492 21 1 -0.3633 0.8512 0.5759 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.6847 0.7331 1.1026 25 1 4.0240 1.1667 -0.5900 26 1 1.0461 1.0338 2.6382 27 1 3.8985 3.5821 -1.3887 28 1 3.7341 4.9235 -0.1339 29 1 5.7364 3.9978 1.1194 30 1 5.9017 2.6559 -0.1348 31 1 2.4477 2.8463 -1.4475 32 1 1.0965 0.2279 -2.2447 33 1 1.6007 1.5183 -3.3625 34 1 2.8240 0.6075 -2.4450 35 1 0.2799 3.4443 -0.5042 36 1 0.0522 3.0242 -2.2189 37 1 -0.3950 1.8587 -0.9501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:28 Heat of formation + Delta-G solvation = 62.299914 kcal Electronic energy + Delta-G solvation = -15733.782821 eV Core-core repulsion = 13513.597334 eV Total energy + Delta-G solvation = -2220.185488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.38923 -35.65921 -32.18938 -30.86990 -29.70278 -26.67494 -25.48096 -23.94272 -21.96254 -20.94508 -18.92997 -18.58628 -16.24908 -15.06715 -14.53031 -14.44292 -13.79725 -13.28744 -13.05227 -12.62656 -12.13240 -11.95147 -11.83738 -11.49242 -11.11127 -11.03466 -10.85372 -10.52813 -10.51816 -10.36895 -10.19169 -10.06296 -9.94478 -9.52984 -9.24701 -8.56870 -8.49368 -7.86568 -6.60985 -6.01918 -3.66626 3.43164 3.54600 3.61770 4.65160 4.85293 5.31908 5.60984 5.66399 5.77415 5.88414 5.97165 6.12418 6.18313 6.18863 6.34777 6.39458 6.42814 6.43679 6.51853 6.61268 6.66075 6.71862 6.78724 6.82202 7.00741 7.04371 7.09574 7.13026 7.24907 7.39605 7.74132 8.06293 8.47551 8.53343 8.74151 9.18477 9.80166 11.05471 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.017670 C = 0.012941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.148723 B = 1584.204842 C = 2163.121029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.468 5.468 4 C 0.128 3.872 5 C 0.070 3.930 6 C -0.531 4.531 7 H 0.053 0.947 8 C 0.124 3.876 9 N -0.788 5.788 10 Si 0.841 3.159 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.293 1.293 14 C -0.226 4.226 15 C -0.219 4.219 16 C 0.056 3.944 17 C -0.181 4.181 18 C -0.145 4.145 19 H 0.040 0.960 20 H 0.040 0.960 21 H 0.068 0.932 22 H 0.013 0.987 23 H 0.077 0.923 24 H 0.083 0.917 25 H -0.017 1.017 26 H 0.256 0.744 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -2.878 -6.275 7.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 N -0.190 5.190 4 C 0.001 3.999 5 C 0.068 3.932 6 C -0.565 4.565 7 H 0.071 0.929 8 C -0.087 4.087 9 N -0.417 5.417 10 Si 0.667 3.333 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.220 1.220 14 C -0.264 4.264 15 C -0.257 4.257 16 C -0.053 4.053 17 C -0.239 4.239 18 C -0.202 4.202 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.087 0.913 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.001 0.999 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.409 -2.850 -5.807 6.903 hybrid contribution -0.379 0.334 -0.437 0.668 sum -2.789 -2.516 -6.244 7.287 Atomic orbital electron populations 1.21991 0.97072 1.01099 0.99887 1.21958 0.94504 0.90843 0.99258 1.62170 1.16461 1.14087 1.26310 1.21292 0.85665 0.97325 0.95621 1.19009 0.90677 0.89857 0.93610 1.20007 1.10580 1.20829 1.05084 0.92890 1.24429 0.97593 0.93148 0.93537 1.70300 1.23073 1.09388 1.38930 0.87440 0.83935 0.83136 0.78748 1.20113 1.20839 1.22023 1.23173 1.05495 1.01104 0.96591 1.22891 0.92767 1.05369 1.04649 1.22029 0.97944 0.96887 0.88456 1.22531 1.00987 1.00990 0.99431 1.22028 0.97220 1.01427 0.99548 0.94147 0.94107 0.91268 0.96958 0.90426 0.89839 0.99912 0.93349 0.91886 0.90854 0.90848 0.92022 0.89527 0.92187 0.93736 0.93664 0.92458 0.94590 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.13 37.16 0.30 -2.17 16 2 C 0.06 1.20 4.28 -3.82 -0.02 1.19 16 3 N -0.47 -10.01 1.98 -226.65 -0.45 -10.46 16 4 C 0.13 2.96 3.93 -3.82 -0.02 2.95 16 5 C 0.07 1.71 2.10 -155.66 -0.33 1.39 16 6 C -0.53 -14.53 8.94 -34.44 -0.31 -14.84 16 7 H 0.05 1.51 8.04 -52.49 -0.42 1.09 16 8 C 0.12 3.29 4.78 -17.82 -0.09 3.21 16 9 N -0.79 -20.10 7.94 55.43 0.44 -19.66 16 10 Si 0.84 20.59 29.68 -169.99 -5.04 15.55 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C -0.23 -5.08 8.65 -26.70 -0.23 -5.31 16 15 C -0.22 -4.91 9.92 -26.70 -0.26 -5.18 16 16 C 0.06 1.08 2.65 -67.71 -0.18 0.90 16 17 C -0.18 -3.01 7.89 37.16 0.29 -2.71 16 18 C -0.14 -2.67 9.13 37.16 0.34 -2.33 16 19 H 0.04 0.64 5.75 -51.93 -0.30 0.34 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.07 1.35 7.11 -51.93 -0.37 0.98 16 22 H 0.01 0.23 5.69 -51.93 -0.30 -0.07 16 23 H 0.08 1.60 7.10 -51.93 -0.37 1.23 16 24 H 0.08 2.08 6.87 -51.93 -0.36 1.72 16 25 H -0.02 -0.38 7.50 -51.93 -0.39 -0.77 16 26 H 0.26 6.32 8.32 -40.82 -0.34 5.98 16 27 H 0.06 1.33 6.33 -51.93 -0.33 1.00 16 28 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.80 4.04 -51.92 -0.21 1.59 16 32 H 0.06 0.96 4.90 -51.93 -0.25 0.70 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.76 7.59 -51.93 -0.39 0.37 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.10 4.14 -51.93 -0.22 0.89 16 LS Contribution 271.69 15.07 4.09 4.09 Total: -1.00 -26.05 271.69 -7.45 -33.50 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.00 Total: -0.10 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -0.49 Total: -22.92 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: -0.01 Total: -30.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.04 Total: 15.55 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.05 -7.45 -33.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.800 kcal (2) G-P(sol) polarization free energy of solvation -26.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds