Wall clock time and date at job start Sun Mar 29 2020 21:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46828 * 2 1 4 4 C 1.46904 * 111.00130 * 167.32279 * 3 2 1 5 5 C 1.52998 * 109.47345 * 198.31008 * 4 3 2 6 6 C 1.50699 * 115.55055 * 65.90659 * 5 4 3 7 7 H 1.08000 * 119.99727 * 156.84641 * 6 5 4 8 8 C 1.37871 * 120.00094 * 336.84749 * 6 5 4 9 9 N 1.31516 * 120.00210 * 38.41392 * 8 6 5 10 10 Si 1.86804 * 119.99872 * 218.41646 * 8 6 5 11 11 H 1.48494 * 109.47188 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47055 * 119.99926 * 10 8 6 13 13 H 1.48498 * 109.46826 * 239.99676 * 10 8 6 14 14 C 1.53000 * 117.49622 * 280.23465 * 5 4 3 15 15 C 1.52996 * 117.49802 * 211.58010 * 5 4 3 16 16 C 1.46897 * 111.00240 * 291.28028 * 3 2 1 17 17 C 1.53006 * 109.46959 * 325.81262 * 16 3 2 18 18 C 1.52996 * 109.47629 * 85.81422 * 16 3 2 19 19 H 1.08994 * 109.47630 * 85.91771 * 1 2 3 20 20 H 1.08999 * 109.46813 * 205.92212 * 1 2 3 21 21 H 1.09001 * 109.47157 * 325.91900 * 1 2 3 22 22 H 1.08998 * 109.47378 * 240.00396 * 2 1 3 23 23 H 1.08996 * 109.47363 * 119.99982 * 2 1 3 24 24 H 1.08995 * 109.46959 * 318.31052 * 4 3 2 25 25 H 1.09000 * 109.46809 * 78.30571 * 4 3 2 26 26 H 0.97002 * 120.00570 * 184.38451 * 9 8 6 27 27 H 1.08996 * 117.50322 * 0.02562 * 14 5 4 28 28 H 1.09002 * 117.49580 * 145.02215 * 14 5 4 29 29 H 1.09004 * 117.50105 * 214.98032 * 15 5 4 30 30 H 1.09000 * 117.49880 * 359.97153 * 15 5 4 31 31 H 1.09008 * 109.47089 * 205.82025 * 16 3 2 32 32 H 1.08999 * 109.46916 * 59.99954 * 17 16 3 33 33 H 1.09001 * 109.47336 * 180.02562 * 17 16 3 34 34 H 1.09003 * 109.47124 * 300.00264 * 17 16 3 35 35 H 1.09003 * 109.46709 * 66.56844 * 18 16 3 36 36 H 1.08999 * 109.47527 * 186.56890 * 18 16 3 37 37 H 1.09005 * 109.47120 * 306.57095 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4566 1.4355 0.3010 5 6 3.8364 2.8511 0.7399 6 6 3.2340 3.3114 2.0423 7 1 3.7094 4.0985 2.6088 8 6 2.0761 2.7277 2.5107 9 7 1.8867 1.4342 2.3665 10 14 0.7761 3.7741 3.3501 11 1 1.2271 5.1884 3.3871 12 1 -0.4988 3.6801 2.5944 13 1 0.5668 3.2853 4.7367 14 6 4.0373 3.9002 -0.3555 15 6 5.2453 3.3417 0.4007 16 6 1.7258 2.0473 -1.2779 17 6 1.8183 1.0269 -2.4142 18 6 0.3143 2.6359 -1.2347 19 1 -0.3634 0.0732 -1.0250 20 1 -0.3633 -0.9243 0.4492 21 1 -0.3633 0.8512 0.5759 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.6847 0.7331 1.1026 25 1 4.0240 1.1667 -0.5900 26 1 1.0461 1.0338 2.6382 27 1 3.8985 3.5821 -1.3887 28 1 3.7341 4.9235 -0.1339 29 1 5.7364 3.9978 1.1194 30 1 5.9017 2.6559 -0.1348 31 1 2.4477 2.8463 -1.4475 32 1 1.0965 0.2279 -2.2447 33 1 1.6007 1.5183 -3.3625 34 1 2.8240 0.6075 -2.4450 35 1 0.2799 3.4443 -0.5042 36 1 0.0522 3.0242 -2.2189 37 1 -0.3950 1.8587 -0.9501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:28 Heat of formation + Delta-G solvation = 50.041509 kcal Electronic energy + Delta-G solvation = -15734.314386 eV Core-core repulsion = 13513.597334 eV Total energy + Delta-G solvation = -2220.717052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02634 -37.40098 -34.15763 -32.40839 -31.27039 -28.05825 -27.45061 -25.69713 -23.53644 -22.65213 -20.77180 -20.18333 -18.12463 -16.72295 -16.41255 -16.06734 -15.58081 -15.02083 -14.59306 -14.23806 -13.70947 -13.57166 -13.35420 -13.16298 -12.83070 -12.72894 -12.52253 -12.33079 -12.17603 -12.02454 -11.97704 -11.78089 -11.49562 -11.35107 -10.91403 -10.40902 -10.31300 -9.80963 -8.25341 -8.03825 -5.72948 1.44596 1.53320 1.61250 2.63270 3.05368 3.53151 3.80628 4.20994 4.32831 4.38739 4.52248 4.53189 4.62627 4.76682 4.80418 4.83262 4.87208 4.93251 4.99242 5.00322 5.05836 5.09210 5.18898 5.19828 5.29976 5.47280 5.49868 5.58946 5.64821 5.67828 5.89261 6.00941 6.63006 6.85483 6.99525 7.15405 7.73464 9.01782 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.017670 C = 0.012941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.148723 B = 1584.204842 C = 2163.121029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.064 3.936 3 N -0.487 5.487 4 C 0.142 3.858 5 C 0.043 3.957 6 C -0.565 4.565 7 H 0.027 0.973 8 C 0.103 3.897 9 N -0.783 5.783 10 Si 0.883 3.117 11 H -0.289 1.289 12 H -0.279 1.279 13 H -0.291 1.291 14 C -0.210 4.210 15 C -0.212 4.212 16 C 0.051 3.949 17 C -0.171 4.171 18 C -0.139 4.139 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.028 0.972 23 H 0.057 0.943 24 H 0.057 0.943 25 H -0.008 1.008 26 H 0.259 0.741 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 -3.640 -7.856 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 N -0.210 5.210 4 C 0.014 3.986 5 C 0.042 3.958 6 C -0.599 4.599 7 H 0.045 0.955 8 C -0.109 4.109 9 N -0.411 5.411 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.205 1.205 13 H -0.218 1.218 14 C -0.248 4.248 15 C -0.250 4.250 16 C -0.057 4.057 17 C -0.229 4.229 18 C -0.197 4.197 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.010 0.990 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.237 -3.620 -7.390 8.843 hybrid contribution -0.110 0.577 0.074 0.592 sum -3.347 -3.043 -7.316 8.601 Atomic orbital electron populations 1.21891 0.95465 1.00942 1.00828 1.21949 0.95701 0.89732 0.98993 1.62078 1.15321 1.15496 1.28099 1.21009 0.87097 0.95560 0.94932 1.19096 0.92165 0.91264 0.93313 1.20083 1.12027 1.21071 1.06683 0.95465 1.24711 0.98141 0.93819 0.94224 1.70326 1.23153 1.09272 1.38364 0.86802 0.82525 0.81442 0.78236 1.21474 1.20513 1.21807 1.23076 1.04810 0.99907 0.96962 1.22917 0.92437 1.05206 1.04398 1.22043 0.97910 0.97135 0.88644 1.22400 1.01052 1.00400 0.99066 1.21983 0.96924 1.00613 1.00179 0.92242 0.92390 0.93631 0.95392 0.92461 0.92415 0.99041 0.93013 0.90025 0.91883 0.91478 0.90026 0.91093 0.91311 0.91656 0.94064 0.95447 0.91961 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.13 71.98 0.59 -3.71 16 2 C 0.06 2.35 4.28 86.30 0.37 2.72 16 3 N -0.49 -20.29 1.98 -870.99 -1.72 -22.02 16 4 C 0.14 6.47 3.93 86.30 0.34 6.81 16 5 C 0.04 2.11 2.10 -52.93 -0.11 1.99 16 6 C -0.56 -31.50 8.94 25.60 0.23 -31.27 16 7 H 0.03 1.61 8.04 -2.91 -0.02 1.58 16 8 C 0.10 5.50 4.78 84.65 0.40 5.91 16 9 N -0.78 -39.94 7.94 21.45 0.17 -39.77 16 10 Si 0.88 42.71 29.68 68.60 2.04 44.74 16 11 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 14 C -0.21 -9.27 8.65 30.62 0.26 -9.01 16 15 C -0.21 -9.37 9.92 30.61 0.30 -9.06 16 16 C 0.05 1.88 2.65 44.92 0.12 2.00 16 17 C -0.17 -5.07 7.89 71.98 0.57 -4.51 16 18 C -0.14 -4.85 9.13 71.98 0.66 -4.20 16 19 H 0.06 1.67 5.75 -2.39 -0.01 1.65 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.04 1.68 7.11 -2.39 -0.02 1.67 16 22 H 0.03 0.94 5.69 -2.39 -0.01 0.93 16 23 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 24 H 0.06 2.89 6.87 -2.39 -0.02 2.88 16 25 H -0.01 -0.35 7.50 -2.39 -0.02 -0.37 16 26 H 0.26 12.70 8.32 -92.71 -0.77 11.93 16 27 H 0.08 3.29 6.33 -2.39 -0.02 3.27 16 28 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 30 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.07 2.82 4.04 -2.38 -0.01 2.81 16 32 H 0.07 1.92 4.90 -2.39 -0.01 1.91 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.04 1.25 7.59 -2.39 -0.02 1.24 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.27 4.14 -2.38 -0.01 2.26 16 Total: -1.00 -54.90 271.69 5.24 -49.66 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.03 Total: 9.71 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 3.73 Total: -42.32 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -1.55 Total: -61.79 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.04 Total: 44.74 kcal Total: -54.90 5.24 -49.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.699 kcal (2) G-P(sol) polarization free energy of solvation -54.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds