Wall clock time and date at job start Sun Mar 29 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47312 * 2 1 4 4 N 1.46894 * 109.47186 * 180.02562 * 3 2 1 5 5 C 1.46895 * 111.00300 * 66.04676 * 4 3 2 6 6 C 1.53002 * 109.47352 * 199.44123 * 5 4 3 7 7 C 1.46905 * 110.99964 * 189.99962 * 4 3 2 8 8 C 1.52999 * 109.46699 * 69.87198 * 7 4 3 9 9 C 1.50696 * 115.55210 * 53.90463 * 8 7 4 10 10 H 1.08003 * 120.00094 * 215.15445 * 9 8 7 11 11 C 1.37877 * 120.00028 * 34.88553 * 9 8 7 12 12 N 1.31511 * 120.00068 * 17.14513 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 197.14096 * 11 9 8 14 14 H 1.48498 * 109.47446 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46805 * 120.00339 * 13 11 9 16 16 H 1.48496 * 109.47432 * 239.99959 * 13 11 9 17 17 C 1.53007 * 117.49700 * 199.57461 * 8 7 4 18 18 C 1.53000 * 117.49848 * 268.23098 * 8 7 4 19 19 H 1.09003 * 109.47185 * 299.99768 * 1 2 3 20 20 H 1.08991 * 109.47371 * 59.99863 * 1 2 3 21 21 H 1.08999 * 109.47260 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47185 * 240.00231 * 2 1 3 23 23 H 1.09001 * 109.47454 * 120.00296 * 2 1 3 24 24 H 1.09003 * 109.46806 * 59.99999 * 3 2 1 25 25 H 1.08991 * 109.47015 * 300.00355 * 3 2 1 26 26 H 1.09004 * 109.47389 * 319.43968 * 5 4 3 27 27 H 1.09005 * 109.47284 * 79.43764 * 5 4 3 28 28 H 1.09010 * 109.47019 * 178.55278 * 6 5 4 29 29 H 1.08994 * 109.46782 * 298.55077 * 6 5 4 30 30 H 1.08995 * 109.46836 * 58.55526 * 6 5 4 31 31 H 1.08998 * 109.47184 * 309.87366 * 7 4 3 32 32 H 1.08998 * 109.47127 * 189.86682 * 7 4 3 33 33 H 0.97001 * 120.00373 * 184.40419 * 12 11 9 34 34 H 1.08994 * 117.49895 * 215.00372 * 17 8 7 35 35 H 1.09003 * 117.49361 * 0.02562 * 17 8 7 36 36 H 1.09004 * 117.49949 * 359.97438 * 18 8 7 37 37 H 1.09000 * 117.50212 * 144.97884 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0349 0.8859 -1.2542 6 6 5.4877 0.4517 -1.0495 7 6 4.0355 2.7931 0.2375 8 6 3.7555 3.2017 1.6851 9 6 4.2432 2.2401 2.7379 10 1 3.6728 2.0960 3.6436 11 6 5.4149 1.5401 2.5425 12 7 6.2735 1.9371 1.6288 13 14 5.7828 0.0280 3.5756 14 1 4.6654 -0.2067 4.5251 15 1 5.9339 -1.1531 2.6880 16 1 7.0413 0.2410 4.3344 17 6 3.7964 4.6945 2.0183 18 6 2.4556 3.9579 1.9668 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.6767 1.9564 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 3.4361 0.0239 -1.5485 27 1 3.9890 1.6442 -2.0359 28 1 5.8699 0.0152 -1.9724 29 1 6.0914 1.3183 -0.7803 30 1 5.5367 -0.2878 -0.2503 31 1 3.5504 3.4967 -0.4390 32 1 5.1109 2.8004 0.0595 33 1 7.0668 1.4094 1.4469 34 1 4.1762 4.9810 2.9990 35 1 4.0225 5.3854 1.2061 36 1 1.8001 4.1647 1.1207 37 1 1.9529 3.7596 2.9134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:07 Heat of formation + Delta-G solvation = 21.191125 kcal Electronic energy + Delta-G solvation = -15234.339866 eV Core-core repulsion = 13012.371767 eV Total energy + Delta-G solvation = -2221.968099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.87429 -35.44126 -32.85659 -31.90052 -29.53481 -26.31428 -25.22156 -23.55337 -21.65267 -20.85375 -19.68784 -18.80339 -16.17309 -14.80022 -14.73500 -14.42763 -14.10464 -13.50254 -13.30511 -12.71546 -12.69409 -12.12775 -11.51468 -11.37964 -11.23417 -11.00647 -10.81972 -10.72248 -10.53495 -10.41929 -10.34340 -10.28270 -9.85272 -9.74350 -9.08366 -8.97810 -8.47230 -7.82262 -7.09662 -5.89741 -3.81698 3.40270 3.48978 3.53678 4.57795 4.80636 5.21319 5.44316 5.53552 5.69550 5.79232 5.86217 5.96716 6.08357 6.18438 6.21928 6.29695 6.33149 6.40767 6.46347 6.51770 6.63528 6.75093 6.77275 6.82211 6.86081 6.94727 7.03527 7.24288 7.27403 7.42369 7.66028 8.08097 8.28327 8.32553 8.64520 9.09671 9.76235 11.17316 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.014224 C = 0.012306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.320636 B = 1968.084994 C = 2274.700891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.503 5.503 5 C 0.054 3.946 6 C -0.140 4.140 7 C 0.101 3.899 8 C 0.070 3.930 9 C -0.472 4.472 10 H 0.052 0.948 11 C 0.096 3.904 12 N -0.868 5.868 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.292 1.292 17 C -0.208 4.208 18 C -0.219 4.219 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.008 0.992 26 H 0.058 0.942 27 H 0.014 0.986 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.055 0.945 31 H -0.014 1.014 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -2.250 -5.123 7.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.071 4.071 4 N -0.226 5.226 5 C -0.074 4.074 6 C -0.198 4.198 7 C -0.026 4.026 8 C 0.069 3.931 9 C -0.509 4.509 10 H 0.071 0.929 11 C -0.107 4.107 12 N -0.505 5.505 13 Si 0.706 3.294 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.219 1.219 17 C -0.246 4.246 18 C -0.257 4.257 19 H 0.073 0.927 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.004 0.996 32 H 0.131 0.869 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.135 -2.573 -4.786 7.477 hybrid contribution -0.182 -0.251 -0.170 0.353 sum -5.317 -2.824 -4.956 7.798 Atomic orbital electron populations 1.21725 0.96671 1.00809 1.01353 1.21561 0.94306 0.97861 1.02140 1.22139 0.89329 0.95651 0.99997 1.61744 1.05089 1.24139 1.31621 1.22023 0.96829 0.97731 0.90812 1.21750 0.95971 1.02781 0.99255 1.21715 1.02093 0.84968 0.93831 1.18934 0.91913 0.88606 0.93614 1.20237 1.05895 1.22641 1.02116 0.92942 1.24604 0.94877 0.96236 0.95017 1.69948 1.10330 1.36363 1.33905 0.86801 0.77523 0.84672 0.80382 1.20107 1.20886 1.21860 1.22970 1.01031 0.99866 1.00746 1.22949 0.91486 1.10764 1.00470 0.92743 0.93490 0.93300 0.92848 0.91071 0.89818 0.97378 0.92398 0.96827 0.94833 0.90568 0.92567 0.99638 0.86934 0.93409 0.90512 0.92153 0.92001 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.15 0.37 -1.65 16 2 C -0.12 -2.01 5.91 -26.73 -0.16 -2.17 16 3 C 0.06 1.09 4.78 -3.82 -0.02 1.07 16 4 N -0.50 -10.83 3.96 -234.63 -0.93 -11.76 16 5 C 0.05 1.04 5.57 -3.83 -0.02 1.02 16 6 C -0.14 -2.71 9.78 37.16 0.36 -2.35 16 7 C 0.10 2.36 3.95 -3.82 -0.02 2.35 16 8 C 0.07 1.73 1.50 -155.66 -0.23 1.49 16 9 C -0.47 -12.79 8.70 -34.44 -0.30 -13.09 16 10 H 0.05 1.46 7.87 -52.48 -0.41 1.05 16 11 C 0.10 2.56 5.04 -17.82 -0.09 2.47 16 12 N -0.87 -23.17 9.88 55.43 0.55 -22.63 16 13 Si 0.88 21.29 29.57 -169.99 -5.03 16.26 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 C -0.21 -4.81 9.96 -26.69 -0.27 -5.07 16 18 C -0.22 -4.84 8.26 -26.69 -0.22 -5.06 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.84 6.25 -51.93 -0.32 0.52 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.08 1.72 5.67 -51.93 -0.29 1.43 16 25 H 0.01 0.15 8.12 -51.93 -0.42 -0.27 16 26 H 0.06 1.01 5.88 -51.93 -0.31 0.70 16 27 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 28 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.08 1.63 5.82 -51.93 -0.30 1.33 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H -0.01 -0.33 8.02 -51.93 -0.42 -0.74 16 32 H 0.11 2.86 4.63 -51.93 -0.24 2.62 16 33 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 34 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.27 8.00 -51.93 -0.42 0.85 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 287.96 15.07 4.34 4.34 Total: -1.00 -26.68 287.96 -8.15 -34.83 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.49 Total: -0.06 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -0.59 Total: -20.99 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.38 Total: -34.39 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.68 -8.15 -34.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.026 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds