Wall clock time and date at job start Sun Mar 29 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47312 * 2 1 4 4 N 1.46894 * 109.47186 * 180.02562 * 3 2 1 5 5 C 1.46895 * 111.00300 * 66.04676 * 4 3 2 6 6 C 1.53002 * 109.47352 * 199.44123 * 5 4 3 7 7 C 1.46905 * 110.99964 * 189.99962 * 4 3 2 8 8 C 1.52999 * 109.46699 * 69.87198 * 7 4 3 9 9 C 1.50696 * 115.55210 * 53.90463 * 8 7 4 10 10 H 1.08003 * 120.00094 * 215.15445 * 9 8 7 11 11 C 1.37877 * 120.00028 * 34.88553 * 9 8 7 12 12 N 1.31511 * 120.00068 * 17.14513 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 197.14096 * 11 9 8 14 14 H 1.48498 * 109.47446 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46805 * 120.00339 * 13 11 9 16 16 H 1.48496 * 109.47432 * 239.99959 * 13 11 9 17 17 C 1.53007 * 117.49700 * 199.57461 * 8 7 4 18 18 C 1.53000 * 117.49848 * 268.23098 * 8 7 4 19 19 H 1.09003 * 109.47185 * 299.99768 * 1 2 3 20 20 H 1.08991 * 109.47371 * 59.99863 * 1 2 3 21 21 H 1.08999 * 109.47260 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47185 * 240.00231 * 2 1 3 23 23 H 1.09001 * 109.47454 * 120.00296 * 2 1 3 24 24 H 1.09003 * 109.46806 * 59.99999 * 3 2 1 25 25 H 1.08991 * 109.47015 * 300.00355 * 3 2 1 26 26 H 1.09004 * 109.47389 * 319.43968 * 5 4 3 27 27 H 1.09005 * 109.47284 * 79.43764 * 5 4 3 28 28 H 1.09010 * 109.47019 * 178.55278 * 6 5 4 29 29 H 1.08994 * 109.46782 * 298.55077 * 6 5 4 30 30 H 1.08995 * 109.46836 * 58.55526 * 6 5 4 31 31 H 1.08998 * 109.47184 * 309.87366 * 7 4 3 32 32 H 1.08998 * 109.47127 * 189.86682 * 7 4 3 33 33 H 0.97001 * 120.00373 * 184.40419 * 12 11 9 34 34 H 1.08994 * 117.49895 * 215.00372 * 17 8 7 35 35 H 1.09003 * 117.49361 * 0.02562 * 17 8 7 36 36 H 1.09004 * 117.49949 * 359.97438 * 18 8 7 37 37 H 1.09000 * 117.50212 * 144.97884 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0349 0.8859 -1.2542 6 6 5.4877 0.4517 -1.0495 7 6 4.0355 2.7931 0.2375 8 6 3.7555 3.2017 1.6851 9 6 4.2432 2.2401 2.7379 10 1 3.6728 2.0960 3.6436 11 6 5.4149 1.5401 2.5425 12 7 6.2735 1.9371 1.6288 13 14 5.7828 0.0280 3.5756 14 1 4.6654 -0.2067 4.5251 15 1 5.9339 -1.1531 2.6880 16 1 7.0413 0.2410 4.3344 17 6 3.7964 4.6945 2.0183 18 6 2.4556 3.9579 1.9668 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.6767 1.9564 0.8900 25 1 1.6767 1.9563 -0.8899 26 1 3.4361 0.0239 -1.5485 27 1 3.9890 1.6442 -2.0359 28 1 5.8699 0.0152 -1.9724 29 1 6.0914 1.3183 -0.7803 30 1 5.5367 -0.2878 -0.2503 31 1 3.5504 3.4967 -0.4390 32 1 5.1109 2.8004 0.0595 33 1 7.0668 1.4094 1.4469 34 1 4.1762 4.9810 2.9990 35 1 4.0225 5.3854 1.2061 36 1 1.8001 4.1647 1.1207 37 1 1.9529 3.7596 2.9134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:07 Heat of formation + Delta-G solvation = 7.495140 kcal Electronic energy + Delta-G solvation = -15234.933768 eV Core-core repulsion = 13012.371767 eV Total energy + Delta-G solvation = -2222.562001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56904 -37.14539 -34.30562 -33.84350 -31.09023 -27.93866 -27.18111 -25.09947 -23.22664 -22.52529 -21.21024 -20.70508 -18.09195 -16.59036 -16.26229 -16.15935 -15.74645 -15.24012 -14.93419 -14.42137 -14.00330 -13.65533 -13.31118 -13.06259 -12.82429 -12.58581 -12.52101 -12.40543 -12.22466 -12.15013 -12.03621 -11.80925 -11.54436 -11.30951 -11.01142 -10.80564 -10.34772 -9.78516 -8.71617 -7.93006 -5.89669 1.44405 1.50254 1.57306 2.56939 3.11353 3.38088 3.79219 4.12558 4.25284 4.32044 4.37706 4.54558 4.57401 4.60758 4.74538 4.80254 4.80843 4.93431 4.95832 4.97604 5.00938 5.12177 5.18893 5.25456 5.29953 5.41811 5.48053 5.53105 5.59067 5.62631 5.76722 6.06942 6.51848 6.67793 6.76667 7.05354 7.68769 9.11909 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.014224 C = 0.012306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.320636 B = 1968.084994 C = 2274.700891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.059 3.941 4 N -0.524 5.524 5 C 0.054 3.946 6 C -0.131 4.131 7 C 0.113 3.887 8 C 0.044 3.956 9 C -0.492 4.492 10 H 0.034 0.966 11 C 0.068 3.932 12 N -0.877 5.877 13 Si 0.922 3.078 14 H -0.280 1.280 15 H -0.281 1.281 16 H -0.291 1.291 17 C -0.210 4.210 18 C -0.196 4.196 19 H 0.050 0.950 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.032 0.968 31 H -0.011 1.011 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 -2.838 -6.185 9.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.069 4.069 4 N -0.247 5.247 5 C -0.073 4.073 6 C -0.189 4.189 7 C -0.015 4.015 8 C 0.043 3.957 9 C -0.528 4.528 10 H 0.052 0.948 11 C -0.135 4.135 12 N -0.514 5.514 13 Si 0.750 3.250 14 H -0.205 1.205 15 H -0.207 1.207 16 H -0.217 1.217 17 C -0.249 4.249 18 C -0.233 4.233 19 H 0.069 0.931 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.007 0.993 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.146 -3.160 -5.848 9.053 hybrid contribution 0.137 -0.052 0.165 0.221 sum -6.009 -3.211 -5.683 8.872 Atomic orbital electron populations 1.21675 0.94246 1.02180 1.01828 1.21506 0.96382 0.95909 1.01523 1.22144 0.87939 0.97283 0.99571 1.61695 1.06626 1.23100 1.33275 1.22075 0.96684 0.98537 0.90038 1.21650 0.96212 1.01155 0.99872 1.21440 1.00765 0.86233 0.93025 1.19023 0.93990 0.88780 0.93863 1.20339 1.06092 1.24058 1.02346 0.94771 1.25007 0.94833 0.97700 0.95918 1.70019 1.10325 1.36658 1.34388 0.86121 0.77023 0.82612 0.79277 1.20537 1.20697 1.21749 1.22964 1.01934 0.99324 1.00647 1.22891 0.90858 1.08552 1.01005 0.93119 0.92168 0.91522 0.91812 0.93269 0.91618 0.96221 0.90352 0.96000 0.91747 0.92977 0.94866 0.99261 0.89278 0.93390 0.91498 0.90908 0.90074 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.60 5.91 30.59 0.18 -3.42 16 3 C 0.06 2.14 4.78 86.31 0.41 2.56 16 4 N -0.52 -22.03 3.96 -896.23 -3.55 -25.58 16 5 C 0.05 1.98 5.57 86.31 0.48 2.46 16 6 C -0.13 -4.94 9.78 71.98 0.70 -4.24 16 7 C 0.11 5.23 3.95 86.30 0.34 5.57 16 8 C 0.04 2.17 1.50 -52.93 -0.08 2.09 16 9 C -0.49 -26.86 8.70 25.60 0.22 -26.64 16 10 H 0.03 1.94 7.87 -2.91 -0.02 1.91 16 11 C 0.07 3.64 5.04 84.66 0.43 4.07 16 12 N -0.88 -47.10 9.88 21.45 0.21 -46.88 16 13 Si 0.92 43.91 29.57 68.60 2.03 45.94 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 17 C -0.21 -9.61 9.96 30.62 0.30 -9.31 16 18 C -0.20 -8.42 8.26 30.62 0.25 -8.17 16 19 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.84 6.25 -2.39 -0.01 1.82 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 2.63 5.67 -2.39 -0.01 2.61 16 25 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 26 H 0.08 2.51 5.88 -2.39 -0.01 2.49 16 27 H 0.02 0.76 8.00 -2.38 -0.02 0.74 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.05 2.21 5.82 -2.39 -0.01 2.20 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H -0.01 -0.47 8.02 -2.39 -0.02 -0.49 16 32 H 0.09 4.55 4.63 -2.39 -0.01 4.54 16 33 H 0.26 13.30 8.32 -92.71 -0.77 12.53 16 34 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.08 3.16 8.00 -2.38 -0.02 3.14 16 37 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -55.87 287.96 3.66 -52.21 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.01 Total: 12.12 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.96 Total: -37.80 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -3.34 Total: -72.47 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -55.87 3.66 -52.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.709 kcal (2) G-P(sol) polarization free energy of solvation -55.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds