Wall clock time and date at job start Sun Mar 29 2020 21:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 H 1.08999 * 109.47042 * 56.58793 * 3 2 1 5 5 C 1.53005 * 109.47027 * 176.57971 * 3 2 1 6 6 N 1.46897 * 109.47323 * 296.58210 * 3 2 1 7 7 C 1.46897 * 111.00184 * 318.04996 * 6 3 2 8 8 C 1.46900 * 110.99725 * 82.00424 * 6 3 2 9 9 C 1.53004 * 109.47101 * 156.51533 * 8 6 3 10 10 C 1.50698 * 115.54787 * 281.19438 * 9 8 6 11 11 H 1.08011 * 120.00210 * 118.33453 * 10 9 8 12 12 C 1.37879 * 120.00342 * 298.33634 * 10 9 8 13 13 N 1.31515 * 120.00212 * 162.12665 * 12 10 9 14 14 Si 1.86792 * 119.99821 * 342.13089 * 12 10 9 15 15 H 1.48502 * 109.47335 * 90.21728 * 14 12 10 16 16 H 1.48499 * 109.47192 * 210.21899 * 14 12 10 17 17 H 1.48501 * 109.47117 * 330.21810 * 14 12 10 18 18 C 1.52997 * 117.50221 * 135.48680 * 9 8 6 19 19 C 1.53000 * 117.49911 * 66.86065 * 9 8 6 20 20 H 1.08999 * 109.47283 * 73.27952 * 1 2 3 21 21 H 1.08998 * 109.47698 * 193.28432 * 1 2 3 22 22 H 1.09003 * 109.47057 * 313.28424 * 1 2 3 23 23 H 1.09002 * 109.46899 * 240.00201 * 2 1 3 24 24 H 1.09003 * 109.46664 * 120.00230 * 2 1 3 25 25 H 1.08999 * 109.46952 * 180.02562 * 5 3 2 26 26 H 1.08998 * 109.47157 * 299.99950 * 5 3 2 27 27 H 1.08999 * 109.46539 * 60.00513 * 5 3 2 28 28 H 1.08995 * 109.47076 * 196.16235 * 7 6 3 29 29 H 1.08998 * 109.47155 * 76.15899 * 7 6 3 30 30 H 1.09001 * 109.46539 * 316.16558 * 7 6 3 31 31 H 1.09001 * 109.47054 * 276.51244 * 8 6 3 32 32 H 1.09000 * 109.47442 * 36.51446 * 8 6 3 33 33 H 0.96994 * 119.99833 * 180.02562 * 13 12 10 34 34 H 1.08998 * 117.49790 * 0.02562 * 18 9 8 35 35 H 1.09000 * 117.49826 * 145.01714 * 18 9 8 36 36 H 1.08998 * 117.49808 * 214.97990 * 19 9 8 37 37 H 1.08998 * 117.49747 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6276 1.9736 0.8578 5 6 3.5676 1.4432 0.0861 6 7 1.6190 2.1107 -1.2385 7 6 1.7770 1.2211 -2.3967 8 6 0.2362 2.5950 -1.1315 9 6 0.0195 3.7420 -2.1207 10 6 0.5566 5.0823 -1.6894 11 1 1.3243 5.5696 -2.2725 12 6 0.0681 5.6868 -0.5505 13 7 0.7489 6.6543 0.0241 14 14 -1.5606 5.1315 0.1762 15 1 -1.3190 4.0465 1.1610 16 1 -2.2167 6.2783 0.8542 17 1 -2.4409 4.6283 -0.9087 18 6 -1.2684 3.7290 -2.9464 19 6 0.0708 3.4072 -3.6127 20 1 -0.3634 0.2957 -0.9842 21 1 -0.3634 -1.0001 0.2361 22 1 -0.3633 0.7046 0.7481 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 3.9310 2.4709 0.0865 26 1 3.8800 0.9474 1.0051 27 1 3.9800 0.9120 -0.7718 28 1 1.7387 1.8085 -3.3140 29 1 0.9726 0.4856 -2.4024 30 1 2.7371 0.7089 -2.3330 31 1 -0.4523 1.7819 -1.3615 32 1 0.0531 2.9503 -0.1174 33 1 0.4054 7.0792 0.8255 34 1 -1.9616 2.9035 -2.7846 35 1 -1.7277 4.6901 -3.1777 36 1 0.4926 4.1567 -4.2825 37 1 0.2593 2.3700 -3.8896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:32 Heat of formation + Delta-G solvation = 34.478305 kcal Electronic energy + Delta-G solvation = -15269.095123 eV Core-core repulsion = 13047.703199 eV Total energy + Delta-G solvation = -2221.391923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.84716 -36.17252 -32.04604 -31.56810 -29.95534 -27.51420 -25.35231 -24.10308 -22.48648 -21.43536 -19.32948 -18.79161 -16.20328 -15.90702 -15.09322 -14.49451 -14.11306 -13.68261 -13.32122 -12.81965 -12.67101 -12.43989 -11.99019 -11.91586 -11.56828 -11.37214 -11.19203 -10.92794 -10.79501 -10.70301 -10.30979 -10.27020 -10.20983 -9.93683 -9.33978 -8.92989 -8.54518 -8.16710 -7.38236 -6.01228 -3.91358 3.31294 3.43335 3.52257 4.46158 4.53159 5.03549 5.10805 5.28909 5.32251 5.42549 5.71224 5.78395 5.83182 5.85897 5.88919 5.99700 6.05162 6.09717 6.17608 6.21184 6.27814 6.33045 6.39440 6.50408 6.58474 6.61924 6.72002 6.73264 6.85141 7.23349 7.28548 7.80982 7.91957 7.97202 8.66968 9.07579 9.66495 11.11510 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.012585 C = 0.011689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.680508 B = 2224.308864 C = 2394.931481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.076 0.924 5 C -0.137 4.137 6 N -0.508 5.508 7 C 0.020 3.980 8 C 0.086 3.914 9 C 0.016 3.984 10 C -0.467 4.467 11 H 0.073 0.927 12 C 0.080 3.920 13 N -0.892 5.892 14 Si 0.858 3.142 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.252 1.252 18 C -0.204 4.204 19 C -0.186 4.186 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -12.489 -0.772 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.193 4.193 3 C -0.033 4.033 4 H 0.094 0.906 5 C -0.194 4.194 6 N -0.231 5.231 7 C -0.128 4.128 8 C -0.041 4.041 9 C 0.015 3.985 10 C -0.504 4.504 11 H 0.091 0.909 12 C -0.122 4.122 13 N -0.529 5.529 14 Si 0.685 3.315 15 H -0.208 1.208 16 H -0.220 1.220 17 H -0.176 1.176 18 C -0.242 4.242 19 C -0.223 4.223 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.397 -11.926 -0.683 11.952 hybrid contribution -1.456 -0.911 0.644 1.835 sum -1.059 -12.837 -0.039 12.881 Atomic orbital electron populations 1.22150 0.96282 1.00983 1.02618 1.22279 0.96076 0.99050 1.01869 1.21859 0.95915 0.91636 0.93862 0.90558 1.21753 0.94936 1.02591 1.00151 1.61916 1.23843 1.35921 1.01395 1.22655 0.99294 0.95320 0.95563 1.22266 0.86675 0.94972 1.00176 1.19372 0.95327 0.95584 0.88239 1.20176 1.21111 0.99928 1.09165 0.90895 1.24849 0.96647 0.95032 0.95710 1.70007 1.36908 1.26557 1.19475 0.87150 0.86531 0.78031 0.79743 1.20752 1.22014 1.17576 1.23123 0.91115 1.00734 1.09215 1.22859 1.01487 0.99467 0.98494 0.91690 0.93437 0.92597 0.91688 0.92263 0.91458 0.93291 0.93207 0.90642 0.96322 0.92610 0.95883 0.91536 0.92896 0.91878 0.89814 0.90142 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.36 37.16 0.31 -2.03 16 2 C -0.15 -2.15 4.90 -26.74 -0.13 -2.28 16 3 C 0.08 1.29 2.53 -67.71 -0.17 1.11 16 4 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 5 C -0.14 -2.06 9.33 37.16 0.35 -1.71 16 6 N -0.51 -9.85 4.53 -234.89 -1.06 -10.92 16 7 C 0.02 0.32 7.28 60.06 0.44 0.76 16 8 C 0.09 1.84 3.31 -3.82 -0.01 1.83 16 9 C 0.02 0.38 1.01 -155.66 -0.16 0.22 16 10 C -0.47 -13.19 9.34 -34.44 -0.32 -13.51 16 11 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 12 C 0.08 2.29 5.35 -17.82 -0.10 2.20 16 13 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 14 Si 0.86 21.44 25.54 -169.99 -4.34 17.10 16 15 H -0.28 -6.86 6.85 56.52 0.39 -6.47 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.25 -5.99 5.87 56.52 0.33 -5.66 16 18 C -0.20 -4.39 7.91 -26.73 -0.21 -4.60 16 19 C -0.19 -3.84 8.72 -26.73 -0.23 -4.08 16 20 H 0.06 0.99 4.28 -51.93 -0.22 0.77 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 23 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.69 6.89 -51.93 -0.36 0.33 16 28 H 0.08 1.29 5.35 -51.93 -0.28 1.01 16 29 H 0.02 0.28 5.71 -51.93 -0.30 -0.01 16 30 H 0.06 0.81 6.27 -51.93 -0.33 0.49 16 31 H 0.02 0.46 4.71 -51.93 -0.24 0.21 16 32 H 0.07 1.55 5.06 -51.93 -0.26 1.29 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.06 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.07 1.35 5.84 -51.93 -0.30 1.05 16 LS Contribution 270.89 15.07 4.08 4.08 Total: -1.00 -29.57 270.89 -6.80 -36.37 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.01 Total: 2.03 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -0.24 Total: -22.09 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.29 Total: -37.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.34 Total: 17.10 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.57 -6.80 -36.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.848 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds