Wall clock time and date at job start Sun Mar 29 2020 21:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 H 1.08999 * 109.47042 * 56.58793 * 3 2 1 5 5 C 1.53005 * 109.47027 * 176.57971 * 3 2 1 6 6 N 1.46897 * 109.47323 * 296.58210 * 3 2 1 7 7 C 1.46897 * 111.00184 * 318.04996 * 6 3 2 8 8 C 1.46900 * 110.99725 * 82.00424 * 6 3 2 9 9 C 1.53004 * 109.47101 * 156.51533 * 8 6 3 10 10 C 1.50698 * 115.54787 * 281.19438 * 9 8 6 11 11 H 1.08011 * 120.00210 * 118.33453 * 10 9 8 12 12 C 1.37879 * 120.00342 * 298.33634 * 10 9 8 13 13 N 1.31515 * 120.00212 * 162.12665 * 12 10 9 14 14 Si 1.86792 * 119.99821 * 342.13089 * 12 10 9 15 15 H 1.48502 * 109.47335 * 90.21728 * 14 12 10 16 16 H 1.48499 * 109.47192 * 210.21899 * 14 12 10 17 17 H 1.48501 * 109.47117 * 330.21810 * 14 12 10 18 18 C 1.52997 * 117.50221 * 135.48680 * 9 8 6 19 19 C 1.53000 * 117.49911 * 66.86065 * 9 8 6 20 20 H 1.08999 * 109.47283 * 73.27952 * 1 2 3 21 21 H 1.08998 * 109.47698 * 193.28432 * 1 2 3 22 22 H 1.09003 * 109.47057 * 313.28424 * 1 2 3 23 23 H 1.09002 * 109.46899 * 240.00201 * 2 1 3 24 24 H 1.09003 * 109.46664 * 120.00230 * 2 1 3 25 25 H 1.08999 * 109.46952 * 180.02562 * 5 3 2 26 26 H 1.08998 * 109.47157 * 299.99950 * 5 3 2 27 27 H 1.08999 * 109.46539 * 60.00513 * 5 3 2 28 28 H 1.08995 * 109.47076 * 196.16235 * 7 6 3 29 29 H 1.08998 * 109.47155 * 76.15899 * 7 6 3 30 30 H 1.09001 * 109.46539 * 316.16558 * 7 6 3 31 31 H 1.09001 * 109.47054 * 276.51244 * 8 6 3 32 32 H 1.09000 * 109.47442 * 36.51446 * 8 6 3 33 33 H 0.96994 * 119.99833 * 180.02562 * 13 12 10 34 34 H 1.08998 * 117.49790 * 0.02562 * 18 9 8 35 35 H 1.09000 * 117.49826 * 145.01714 * 18 9 8 36 36 H 1.08998 * 117.49808 * 214.97990 * 19 9 8 37 37 H 1.08998 * 117.49747 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6276 1.9736 0.8578 5 6 3.5676 1.4432 0.0861 6 7 1.6190 2.1107 -1.2385 7 6 1.7770 1.2211 -2.3967 8 6 0.2362 2.5950 -1.1315 9 6 0.0195 3.7420 -2.1207 10 6 0.5566 5.0823 -1.6894 11 1 1.3243 5.5696 -2.2725 12 6 0.0681 5.6868 -0.5505 13 7 0.7489 6.6543 0.0241 14 14 -1.5606 5.1315 0.1762 15 1 -1.3190 4.0465 1.1610 16 1 -2.2167 6.2783 0.8542 17 1 -2.4409 4.6283 -0.9087 18 6 -1.2684 3.7290 -2.9464 19 6 0.0708 3.4072 -3.6127 20 1 -0.3634 0.2957 -0.9842 21 1 -0.3634 -1.0001 0.2361 22 1 -0.3633 0.7046 0.7481 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 3.9310 2.4709 0.0865 26 1 3.8800 0.9474 1.0051 27 1 3.9800 0.9120 -0.7718 28 1 1.7387 1.8085 -3.3140 29 1 0.9726 0.4856 -2.4024 30 1 2.7371 0.7089 -2.3330 31 1 -0.4523 1.7819 -1.3615 32 1 0.0531 2.9503 -0.1174 33 1 0.4054 7.0792 0.8255 34 1 -1.9616 2.9035 -2.7846 35 1 -1.7277 4.6901 -3.1777 36 1 0.4926 4.1567 -4.2825 37 1 0.2593 2.3700 -3.8896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:31 Heat of formation + Delta-G solvation = 14.906385 kcal Electronic energy + Delta-G solvation = -15269.943825 eV Core-core repulsion = 13047.703199 eV Total energy + Delta-G solvation = -2222.240625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29554 -37.81029 -34.22549 -32.87904 -31.17578 -29.08774 -27.33240 -25.46283 -23.78871 -23.12939 -20.82973 -20.50941 -18.21784 -17.20178 -16.87600 -16.06640 -15.69591 -15.15434 -14.75491 -14.61120 -14.21956 -13.93979 -13.42738 -13.25606 -13.00358 -12.91775 -12.65564 -12.60505 -12.27556 -11.96323 -11.94371 -11.88637 -11.75670 -11.46838 -11.20040 -10.83714 -10.41450 -10.16045 -8.78501 -8.24386 -6.18179 1.32295 1.39155 1.52957 2.41610 2.93484 3.14902 3.60909 3.88393 4.09926 4.15285 4.26943 4.39518 4.48092 4.50651 4.55288 4.61229 4.70729 4.77936 4.83478 4.90113 4.97399 4.99067 5.05005 5.10317 5.13479 5.21838 5.30212 5.38556 5.45461 5.55476 5.56692 5.81595 6.38079 6.47168 6.54877 6.83151 7.42779 8.92539 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.012585 C = 0.011689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.680508 B = 2224.308864 C = 2394.931481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C 0.072 3.928 4 H 0.048 0.952 5 C -0.131 4.131 6 N -0.539 5.539 7 C 0.021 3.979 8 C 0.099 3.901 9 C -0.014 4.014 10 C -0.468 4.468 11 H 0.021 0.979 12 C 0.024 3.976 13 N -0.945 5.945 14 Si 0.922 3.078 15 H -0.272 1.272 16 H -0.298 1.298 17 H -0.227 1.227 18 C -0.194 4.194 19 C -0.168 4.168 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -15.769 -1.158 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.183 4.183 3 C -0.037 4.037 4 H 0.066 0.934 5 C -0.189 4.189 6 N -0.262 5.262 7 C -0.126 4.126 8 C -0.029 4.029 9 C -0.016 4.016 10 C -0.506 4.506 11 H 0.039 0.961 12 C -0.173 4.173 13 N -0.585 5.585 14 Si 0.746 3.254 15 H -0.198 1.198 16 H -0.225 1.225 17 H -0.150 1.150 18 C -0.232 4.232 19 C -0.205 4.205 20 H 0.075 0.925 21 H 0.090 0.910 22 H 0.057 0.943 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.791 -15.231 -1.093 15.291 hybrid contribution -0.962 0.145 0.707 1.202 sum -1.752 -15.086 -0.386 15.192 Atomic orbital electron populations 1.22121 0.96404 1.01916 1.01523 1.22181 0.95873 0.96765 1.03467 1.21895 0.96763 0.93204 0.91820 0.93356 1.21710 0.93828 1.01230 1.02097 1.61836 1.22850 1.38100 1.03390 1.22662 1.01049 0.95086 0.93803 1.22004 0.88544 0.94675 0.97650 1.19330 0.97561 0.94083 0.90589 1.20346 1.19687 1.02077 1.08475 0.96095 1.25659 1.00119 0.95173 0.96374 1.70154 1.39040 1.28803 1.20541 0.86131 0.81984 0.77587 0.79652 1.19753 1.22483 1.14984 1.23129 0.91169 1.01320 1.07605 1.22897 1.00447 1.00974 0.96135 0.92494 0.91040 0.94310 0.90210 0.90427 0.94448 0.90902 0.91697 0.91648 0.94500 0.90703 0.93391 0.94324 0.92954 0.88909 0.90995 0.91320 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.36 71.98 0.60 -3.48 16 2 C -0.14 -3.51 4.90 30.59 0.15 -3.36 16 3 C 0.07 2.31 2.53 44.92 0.11 2.43 16 4 H 0.05 1.80 7.48 -2.39 -0.02 1.78 16 5 C -0.13 -3.75 9.33 71.98 0.67 -3.08 16 6 N -0.54 -20.15 4.53 -897.06 -4.07 -24.21 16 7 C 0.02 0.63 7.28 127.69 0.93 1.56 16 8 C 0.10 4.06 3.31 86.30 0.29 4.34 16 9 C -0.01 -0.66 1.01 -52.93 -0.05 -0.71 16 10 C -0.47 -27.39 9.34 25.60 0.24 -27.15 16 11 H 0.02 1.39 8.06 -2.91 -0.02 1.36 16 12 C 0.02 1.42 5.35 84.66 0.45 1.87 16 13 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 14 Si 0.92 44.75 25.54 68.60 1.75 46.51 16 15 H -0.27 -12.70 6.85 99.48 0.68 -12.02 16 16 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 17 H -0.23 -10.01 5.87 99.48 0.58 -9.42 16 18 C -0.19 -7.86 7.91 30.59 0.24 -7.62 16 19 C -0.17 -6.60 8.72 30.60 0.27 -6.34 16 20 H 0.06 1.50 4.28 -2.39 -0.01 1.49 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.04 1.10 7.90 -2.39 -0.02 1.08 16 23 H 0.08 1.74 6.21 -2.39 -0.01 1.73 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.64 6.89 -2.39 -0.02 1.62 16 28 H 0.07 2.05 5.35 -2.39 -0.01 2.04 16 29 H 0.04 0.96 5.71 -2.39 -0.01 0.95 16 30 H 0.07 1.91 6.27 -2.39 -0.01 1.89 16 31 H 0.05 1.73 4.71 -2.39 -0.01 1.71 16 32 H 0.04 1.78 5.06 -2.39 -0.01 1.77 16 33 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 34 H 0.09 3.24 8.09 -2.39 -0.02 3.22 16 35 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.11 3.50 5.84 -2.39 -0.01 3.48 16 Total: -1.00 -66.63 270.89 2.77 -63.85 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.89 Total: 15.70 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.90 Total: -41.54 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.77 Total: -84.52 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.75 Total: 46.51 kcal Total: -66.63 2.77 -63.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.760 kcal (2) G-P(sol) polarization free energy of solvation -66.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds