Wall clock time and date at job start Sun Mar 29 2020 21:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.09000 * 109.47114 * 305.05488 * 3 2 1 5 5 C 1.53004 * 109.46946 * 185.05842 * 3 2 1 6 6 N 1.46899 * 109.47559 * 65.05928 * 3 2 1 7 7 C 1.46898 * 111.00505 * 191.45775 * 6 3 2 8 8 C 1.46901 * 110.99913 * 67.49751 * 6 3 2 9 9 C 1.53009 * 109.47130 * 200.13709 * 8 6 3 10 10 C 1.50700 * 115.54503 * 39.47318 * 9 8 6 11 11 H 1.07998 * 120.00022 * 267.93924 * 10 9 8 12 12 C 1.37874 * 119.99999 * 87.94473 * 10 9 8 13 13 N 1.31513 * 120.00174 * 2.79859 * 12 10 9 14 14 Si 1.86807 * 120.00084 * 182.79559 * 12 10 9 15 15 H 1.48495 * 109.46700 * 90.00153 * 14 12 10 16 16 H 1.48499 * 109.47115 * 210.00348 * 14 12 10 17 17 H 1.48501 * 109.46797 * 330.00485 * 14 12 10 18 18 C 1.52995 * 117.49892 * 253.76389 * 9 8 6 19 19 C 1.52991 * 60.00170 * 252.51323 * 18 9 8 20 20 H 1.08996 * 109.47427 * 304.57666 * 1 2 3 21 21 H 1.09002 * 109.46831 * 64.56790 * 1 2 3 22 22 H 1.09001 * 109.47224 * 184.56952 * 1 2 3 23 23 H 1.08994 * 109.47653 * 239.99738 * 2 1 3 24 24 H 1.09004 * 109.46789 * 119.99264 * 2 1 3 25 25 H 1.09000 * 109.47372 * 180.02562 * 5 3 2 26 26 H 1.09000 * 109.46925 * 299.99762 * 5 3 2 27 27 H 1.08997 * 109.47038 * 59.99778 * 5 3 2 28 28 H 1.09000 * 109.46885 * 53.76846 * 7 6 3 29 29 H 1.08997 * 109.47461 * 173.76690 * 7 6 3 30 30 H 1.09002 * 109.46993 * 293.77783 * 7 6 3 31 31 H 1.08998 * 109.47412 * 320.14079 * 8 6 3 32 32 H 1.08998 * 109.46784 * 80.14492 * 8 6 3 33 33 H 0.96996 * 120.00132 * 185.01353 * 13 12 10 34 34 H 1.08999 * 117.50222 * 0.02562 * 18 9 8 35 35 H 1.09007 * 117.49694 * 145.01682 * 18 9 8 36 36 H 1.09005 * 117.50048 * 252.52043 * 19 18 9 37 37 H 1.09003 * 117.52377 * 107.48030 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9818 -0.8413 5 6 3.5647 1.4444 -0.1272 6 7 1.6526 2.0989 1.2558 7 6 1.8814 3.5483 1.1847 8 6 2.3624 1.5093 2.3988 9 6 1.6076 1.8326 3.6899 10 6 0.1048 1.7695 3.5972 11 1 -0.4592 2.6586 3.3568 12 6 -0.5501 0.5768 3.8196 13 7 0.1317 -0.4931 4.1664 14 14 -2.4058 0.4803 3.6283 15 1 -2.7408 0.1171 2.2279 16 1 -2.9455 -0.5514 4.5499 17 1 -3.0062 1.7987 3.9549 18 6 2.2151 2.8860 4.6184 19 6 2.2526 1.4076 5.0105 20 1 -0.3634 0.5832 0.8461 21 1 -0.3633 0.4413 -0.9281 22 1 -0.3634 -1.0244 0.0819 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.9281 2.4720 -0.1267 26 1 4.0001 0.9051 0.7141 27 1 3.8521 0.9574 -1.0590 28 1 1.3777 3.9529 0.3068 29 1 1.4849 4.0232 2.0821 30 1 2.9512 3.7441 1.1122 31 1 2.4198 0.4282 2.2724 32 1 3.3695 1.9227 2.4535 33 1 -0.3181 -1.3482 4.2519 34 1 3.1522 3.3490 4.3094 35 1 1.5277 3.5338 5.1625 36 1 1.5898 1.0826 5.8126 37 1 3.2144 0.8972 4.9596 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:33 Heat of formation + Delta-G solvation = 22.235380 kcal Electronic energy + Delta-G solvation = -15339.016771 eV Core-core repulsion = 13117.093954 eV Total energy + Delta-G solvation = -2221.922816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.25876 -35.77135 -32.18007 -31.61198 -28.97241 -26.79372 -25.20303 -24.08796 -22.20864 -20.94701 -19.49311 -18.45489 -15.87794 -15.23925 -14.41394 -14.30253 -14.03064 -13.37284 -13.08238 -12.96911 -12.48432 -12.28501 -11.79125 -11.42755 -11.27323 -11.00896 -10.89164 -10.75150 -10.52978 -10.49544 -10.34482 -10.07242 -9.99119 -9.76547 -9.27582 -8.77469 -8.17505 -7.86233 -7.20821 -5.81169 -3.81394 3.41958 3.48222 3.51355 4.57910 4.78098 5.31687 5.45592 5.52554 5.58292 5.73429 5.91848 5.98858 6.03724 6.11563 6.23858 6.26940 6.32045 6.34488 6.47178 6.59684 6.64195 6.66591 6.67659 6.77878 6.84976 6.96887 7.08527 7.24133 7.37846 7.56691 7.67346 8.06608 8.10528 8.18927 8.69401 9.14655 9.79688 11.28293 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.014966 C = 0.011263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.173986 B = 1870.488939 C = 2485.401690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.079 3.921 4 H 0.069 0.931 5 C -0.184 4.184 6 N -0.500 5.500 7 C 0.034 3.966 8 C 0.103 3.897 9 C 0.051 3.949 10 C -0.450 4.450 11 H 0.055 0.945 12 C 0.073 3.927 13 N -0.888 5.888 14 Si 0.878 3.122 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.277 1.277 18 C -0.221 4.221 19 C -0.152 4.152 20 H 0.088 0.912 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.001 0.999 33 H 0.254 0.746 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 2.723 -6.731 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.030 4.030 4 H 0.087 0.913 5 C -0.244 4.244 6 N -0.222 5.222 7 C -0.114 4.114 8 C -0.025 4.025 9 C 0.050 3.950 10 C -0.488 4.488 11 H 0.073 0.927 12 C -0.128 4.128 13 N -0.527 5.527 14 Si 0.706 3.294 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.203 1.203 18 C -0.258 4.258 19 C -0.190 4.190 20 H 0.107 0.893 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.602 2.467 -6.551 7.873 hybrid contribution -0.039 -0.059 -0.261 0.270 sum 3.563 2.408 -6.812 8.056 Atomic orbital electron populations 1.21662 0.95244 1.00843 1.02278 1.21493 0.97100 0.95171 1.00787 1.21753 0.91923 0.96007 0.93318 0.91310 1.22509 0.99089 1.01183 1.01574 1.61963 1.57183 1.01876 1.01187 1.22286 0.97266 0.89994 1.01903 1.21713 0.91299 0.98654 0.90827 1.18883 0.94423 0.95455 0.86217 1.20142 0.88412 0.95011 1.45242 0.92708 1.24803 0.96948 0.96159 0.94911 1.69994 1.35335 0.99240 1.48088 0.86840 0.87220 0.77439 0.77886 1.20548 1.21855 1.20262 1.23089 1.00722 0.92769 1.09269 1.22448 0.99812 0.94015 1.02705 0.89290 0.94705 0.94427 0.93552 0.91280 0.93239 0.92388 0.93098 0.93103 0.90997 0.97375 0.91087 0.98101 0.93582 0.92450 0.90809 0.89709 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.85 37.16 0.37 -2.36 16 2 C -0.11 -1.92 5.37 -26.73 -0.14 -2.06 16 3 C 0.08 1.36 2.30 -67.71 -0.16 1.20 16 4 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 5 C -0.18 -2.80 8.51 37.16 0.32 -2.48 16 6 N -0.50 -9.96 3.32 -234.88 -0.78 -10.74 16 7 C 0.03 0.61 9.10 60.06 0.55 1.15 16 8 C 0.10 2.24 3.62 -3.82 -0.01 2.22 16 9 C 0.05 1.23 1.25 -155.66 -0.19 1.04 16 10 C -0.45 -11.99 8.17 -34.44 -0.28 -12.27 16 11 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 12 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 13 N -0.89 -24.87 12.49 55.43 0.69 -24.17 16 14 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.22 -4.90 9.77 -26.74 -0.26 -5.16 16 19 C -0.15 -3.63 9.06 -26.74 -0.24 -3.87 16 20 H 0.09 2.02 7.63 -51.93 -0.40 1.63 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.39 6.16 -51.93 -0.32 1.07 16 25 H 0.05 0.72 6.88 -51.93 -0.36 0.36 16 26 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.81 7.99 -51.93 -0.42 0.40 16 29 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 30 H 0.01 0.13 6.84 -51.93 -0.36 -0.22 16 31 H 0.07 1.67 5.83 -51.93 -0.30 1.37 16 32 H 0.00 0.02 7.07 -51.93 -0.37 -0.35 16 33 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 34 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 2.20 8.07 -51.93 -0.42 1.78 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -27.10 290.90 -7.48 -34.57 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.59 Total: 0.29 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -0.16 Total: -20.72 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.09 Total: -34.91 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.10 -7.48 -34.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.809 kcal (2) G-P(sol) polarization free energy of solvation -27.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds