Wall clock time and date at job start Sun Mar 29 2020 21:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.09000 * 109.47114 * 305.05488 * 3 2 1 5 5 C 1.53004 * 109.46946 * 185.05842 * 3 2 1 6 6 N 1.46899 * 109.47559 * 65.05928 * 3 2 1 7 7 C 1.46898 * 111.00505 * 191.45775 * 6 3 2 8 8 C 1.46901 * 110.99913 * 67.49751 * 6 3 2 9 9 C 1.53009 * 109.47130 * 200.13709 * 8 6 3 10 10 C 1.50700 * 115.54503 * 39.47318 * 9 8 6 11 11 H 1.07998 * 120.00022 * 267.93924 * 10 9 8 12 12 C 1.37874 * 119.99999 * 87.94473 * 10 9 8 13 13 N 1.31513 * 120.00174 * 2.79859 * 12 10 9 14 14 Si 1.86807 * 120.00084 * 182.79559 * 12 10 9 15 15 H 1.48495 * 109.46700 * 90.00153 * 14 12 10 16 16 H 1.48499 * 109.47115 * 210.00348 * 14 12 10 17 17 H 1.48501 * 109.46797 * 330.00485 * 14 12 10 18 18 C 1.52995 * 117.49892 * 253.76389 * 9 8 6 19 19 C 1.52991 * 60.00170 * 252.51323 * 18 9 8 20 20 H 1.08996 * 109.47427 * 304.57666 * 1 2 3 21 21 H 1.09002 * 109.46831 * 64.56790 * 1 2 3 22 22 H 1.09001 * 109.47224 * 184.56952 * 1 2 3 23 23 H 1.08994 * 109.47653 * 239.99738 * 2 1 3 24 24 H 1.09004 * 109.46789 * 119.99264 * 2 1 3 25 25 H 1.09000 * 109.47372 * 180.02562 * 5 3 2 26 26 H 1.09000 * 109.46925 * 299.99762 * 5 3 2 27 27 H 1.08997 * 109.47038 * 59.99778 * 5 3 2 28 28 H 1.09000 * 109.46885 * 53.76846 * 7 6 3 29 29 H 1.08997 * 109.47461 * 173.76690 * 7 6 3 30 30 H 1.09002 * 109.46993 * 293.77783 * 7 6 3 31 31 H 1.08998 * 109.47412 * 320.14079 * 8 6 3 32 32 H 1.08998 * 109.46784 * 80.14492 * 8 6 3 33 33 H 0.96996 * 120.00132 * 185.01353 * 13 12 10 34 34 H 1.08999 * 117.50222 * 0.02562 * 18 9 8 35 35 H 1.09007 * 117.49694 * 145.01682 * 18 9 8 36 36 H 1.09005 * 117.50048 * 252.52043 * 19 18 9 37 37 H 1.09003 * 117.52377 * 107.48030 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9818 -0.8413 5 6 3.5647 1.4444 -0.1272 6 7 1.6526 2.0989 1.2558 7 6 1.8814 3.5483 1.1847 8 6 2.3624 1.5093 2.3988 9 6 1.6076 1.8326 3.6899 10 6 0.1048 1.7695 3.5972 11 1 -0.4592 2.6586 3.3568 12 6 -0.5501 0.5768 3.8196 13 7 0.1317 -0.4931 4.1664 14 14 -2.4058 0.4803 3.6283 15 1 -2.7408 0.1171 2.2279 16 1 -2.9455 -0.5514 4.5499 17 1 -3.0062 1.7987 3.9549 18 6 2.2151 2.8860 4.6184 19 6 2.2526 1.4076 5.0105 20 1 -0.3634 0.5832 0.8461 21 1 -0.3633 0.4413 -0.9281 22 1 -0.3634 -1.0244 0.0819 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 3.9281 2.4720 -0.1267 26 1 4.0001 0.9051 0.7141 27 1 3.8521 0.9574 -1.0590 28 1 1.3777 3.9529 0.3068 29 1 1.4849 4.0232 2.0821 30 1 2.9512 3.7441 1.1122 31 1 2.4198 0.4282 2.2724 32 1 3.3695 1.9227 2.4535 33 1 -0.3181 -1.3482 4.2519 34 1 3.1522 3.3490 4.3094 35 1 1.5277 3.5338 5.1625 36 1 1.5898 1.0826 5.8126 37 1 3.2144 0.8972 4.9596 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:33 Heat of formation + Delta-G solvation = 8.165714 kcal Electronic energy + Delta-G solvation = -15339.626877 eV Core-core repulsion = 13117.093954 eV Total energy + Delta-G solvation = -2222.532923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81582 -37.52061 -33.89813 -33.46164 -30.32162 -28.43115 -27.21588 -25.53679 -23.68749 -22.80807 -21.21354 -20.11519 -17.75918 -16.85523 -16.39224 -15.86896 -15.63358 -15.05688 -14.60409 -14.36992 -14.07140 -13.93425 -13.29683 -13.14507 -12.85629 -12.75251 -12.64434 -12.43998 -12.29422 -12.12693 -11.94871 -11.84708 -11.47736 -11.30281 -11.12149 -10.74957 -10.19397 -9.74811 -8.68918 -7.90496 -5.93858 1.44911 1.47616 1.53405 2.55228 3.29651 3.40667 3.63517 3.99560 4.25505 4.39825 4.46851 4.53003 4.60896 4.62600 4.73356 4.78869 4.81411 4.86705 4.93209 5.00501 5.04951 5.12367 5.18937 5.25343 5.30403 5.34293 5.39065 5.53437 5.73224 5.76170 5.80027 5.96817 6.48698 6.67660 6.73284 7.06189 7.68975 9.18102 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.014966 C = 0.011263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.173986 B = 1870.488939 C = 2485.401690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.078 3.922 4 H 0.086 0.914 5 C -0.176 4.176 6 N -0.523 5.523 7 C 0.038 3.962 8 C 0.121 3.879 9 C 0.029 3.971 10 C -0.451 4.451 11 H 0.041 0.959 12 C 0.036 3.964 13 N -0.912 5.912 14 Si 0.924 3.076 15 H -0.276 1.276 16 H -0.295 1.295 17 H -0.276 1.276 18 C -0.197 4.197 19 C -0.160 4.160 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.011 0.989 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 3.605 -8.396 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.030 4.030 4 H 0.104 0.896 5 C -0.235 4.235 6 N -0.245 5.245 7 C -0.110 4.110 8 C -0.007 4.007 9 C 0.028 3.972 10 C -0.489 4.489 11 H 0.060 0.940 12 C -0.163 4.163 13 N -0.552 5.552 14 Si 0.752 3.248 15 H -0.202 1.202 16 H -0.221 1.221 17 H -0.201 1.201 18 C -0.234 4.234 19 C -0.199 4.199 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.248 3.365 -8.222 9.847 hybrid contribution -0.254 -0.304 0.245 0.466 sum 3.994 3.061 -7.977 9.431 Atomic orbital electron populations 1.21579 0.96335 1.00009 1.01653 1.21472 0.96052 0.95947 1.00713 1.21814 0.93550 0.95266 0.92385 0.89625 1.22403 0.97114 1.01802 1.02160 1.61849 1.57780 1.03133 1.01757 1.22251 0.98368 0.88563 1.01868 1.21370 0.91498 0.97346 0.90522 1.19049 0.93654 0.96972 0.87489 1.20267 0.89956 0.94350 1.44341 0.94034 1.25278 0.99827 0.96068 0.95083 1.70090 1.36354 0.99390 1.49364 0.86100 0.83789 0.77166 0.77755 1.20167 1.22118 1.20087 1.23047 1.01354 0.91622 1.07346 1.22329 0.99743 0.95789 1.01993 0.93268 0.92358 0.94843 0.90564 0.94285 0.92367 0.93898 0.90763 0.91173 0.92930 0.95830 0.93475 0.97092 0.93979 0.89874 0.91118 0.92447 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 9.85 71.98 0.71 -4.43 16 2 C -0.10 -3.54 5.37 30.59 0.16 -3.38 16 3 C 0.08 2.50 2.30 44.92 0.10 2.60 16 4 H 0.09 2.46 7.95 -2.39 -0.02 2.45 16 5 C -0.18 -4.78 8.51 71.98 0.61 -4.17 16 6 N -0.52 -20.06 3.32 -897.02 -2.98 -23.04 16 7 C 0.04 1.26 9.10 127.69 1.16 2.42 16 8 C 0.12 5.18 3.62 86.31 0.31 5.49 16 9 C 0.03 1.41 1.25 -52.93 -0.07 1.34 16 10 C -0.45 -24.25 8.17 25.60 0.21 -24.04 16 11 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 12 C 0.04 1.95 5.42 84.65 0.46 2.41 16 13 N -0.91 -52.17 12.49 21.45 0.27 -51.90 16 14 Si 0.92 44.46 29.54 68.60 2.03 46.48 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 C -0.20 -8.47 9.77 30.59 0.30 -8.18 16 19 C -0.16 -7.70 9.06 30.59 0.28 -7.42 16 20 H 0.05 2.22 7.63 -2.39 -0.02 2.21 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.04 1.56 6.16 -2.39 -0.01 1.55 16 25 H 0.06 1.48 6.88 -2.39 -0.02 1.46 16 26 H 0.04 1.29 6.72 -2.39 -0.02 1.27 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 2.03 7.99 -2.39 -0.02 2.02 16 29 H 0.05 1.94 7.61 -2.39 -0.02 1.92 16 30 H 0.02 0.71 6.84 -2.39 -0.02 0.69 16 31 H 0.05 2.24 5.83 -2.39 -0.01 2.23 16 32 H 0.01 0.45 7.07 -2.39 -0.02 0.43 16 33 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 34 H 0.08 3.15 8.08 -2.39 -0.02 3.13 16 35 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 36 H 0.06 3.04 8.07 -2.38 -0.02 3.02 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -57.86 290.90 4.56 -53.30 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.00 Total: 12.51 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 4.24 Total: -37.35 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.71 Total: -74.94 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -57.86 4.56 -53.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.470 kcal (2) G-P(sol) polarization free energy of solvation -57.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds