Wall clock time and date at job start Sun Mar 29 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48496 * 109.47361 * 240.00304 * 3 2 1 5 5 H 1.48504 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46826 * 120.00397 * 3 2 1 7 7 C 1.37878 * 120.00504 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99519 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46579 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46579 * 179.97438 * 10 9 7 12 12 C 1.38256 * 120.00097 * 264.97662 * 11 10 9 13 13 C 1.38215 * 120.07338 * 180.02562 * 12 11 10 14 14 C 1.38259 * 120.06411 * 359.97438 * 13 12 11 15 15 C 1.38360 * 120.00548 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.04001 * 179.97438 * 15 14 13 17 17 C 1.38365 * 119.99959 * 85.00735 * 11 10 9 18 18 F 1.35108 * 120.03441 * 0.24624 * 17 11 10 19 19 H 0.97000 * 120.00493 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47009 * 60.00806 * 9 7 2 21 21 H 1.08997 * 109.47090 * 300.00082 * 9 7 2 22 22 H 1.09003 * 109.46743 * 60.00702 * 10 9 7 23 23 H 1.08997 * 109.47525 * 299.99875 * 10 9 7 24 24 H 1.08000 * 119.96449 * 0.02753 * 12 11 10 25 25 H 1.07997 * 119.96637 * 179.97438 * 13 12 11 26 26 H 1.08003 * 119.99482 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0012 12 6 1.2385 -5.6184 1.1917 13 6 0.5480 -6.8157 1.1940 14 6 0.1089 -7.3644 0.0033 15 6 0.3610 -6.7151 -1.1922 16 9 -0.0673 -7.2508 -2.3562 17 6 1.0544 -5.5139 -1.1945 18 9 1.3067 -4.8809 -2.3612 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8727 -3.6046 0.8878 23 1 2.8715 -3.6039 -0.8922 24 1 1.5803 -5.1911 2.1228 25 1 0.3513 -7.3232 2.1268 26 1 -0.4309 -8.2998 0.0064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084931539.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:37 Heat of formation + Delta-G solvation = -102.702042 kcal Electronic energy + Delta-G solvation = -13370.385905 eV Core-core repulsion = 10662.573029 eV Total energy + Delta-G solvation = -2707.812876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.46758 -49.55760 -39.98617 -36.00467 -34.00012 -31.22354 -30.71059 -27.11330 -24.07017 -23.74050 -22.05504 -18.91392 -18.53696 -18.22128 -17.69650 -17.30899 -16.53027 -15.98943 -15.70101 -15.47497 -14.85481 -14.80613 -14.29212 -13.78783 -13.52074 -13.06604 -12.91999 -12.75081 -12.52861 -12.15187 -11.83322 -11.63930 -11.24838 -10.57666 -9.74554 -9.70166 -8.21611 -6.34147 -0.01960 0.08147 1.40011 1.43597 1.51432 2.39044 2.47365 2.85668 3.11583 3.39445 3.64541 3.84971 4.10941 4.24812 4.47214 4.73234 4.81346 4.91795 5.05580 5.10270 5.22103 5.35457 5.45001 5.66952 5.78908 5.85554 6.18465 6.81745 7.35503 8.90119 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.050186 B = 0.007227 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.786257 B = 3873.344653 C = 4106.816365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.068 4.068 11 C -0.091 4.091 12 C -0.102 4.102 13 C -0.081 4.081 14 C -0.127 4.127 15 C 0.047 3.953 16 F -0.142 7.142 17 C 0.029 3.971 18 F -0.150 7.150 19 H 0.264 0.736 20 H -0.021 1.021 21 H 0.001 0.999 22 H 0.089 0.911 23 H 0.054 0.946 24 H 0.159 0.841 25 H 0.186 0.814 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -14.400 3.702 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.000 4.000 10 C -0.106 4.106 11 C -0.092 4.092 12 C -0.120 4.120 13 C -0.098 4.098 14 C -0.145 4.145 15 C 0.027 3.973 16 F -0.121 7.121 17 C 0.009 3.991 18 F -0.129 7.129 19 H 0.073 0.927 20 H -0.003 1.003 21 H 0.020 0.980 22 H 0.107 0.893 23 H 0.073 0.927 24 H 0.176 0.824 25 H 0.203 0.797 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.614 -14.288 3.604 14.823 hybrid contribution 0.077 1.211 -1.007 1.577 sum 1.691 -13.077 2.597 13.439 Atomic orbital electron populations 1.70101 1.07948 1.27954 1.51393 1.26011 0.95753 1.03496 0.94507 0.85459 0.78236 0.77803 0.79306 1.19461 1.20867 1.18559 1.21647 0.93711 0.92028 1.51011 0.91705 1.18900 0.93963 0.92369 0.94784 1.20567 0.97551 0.89906 1.02537 1.20310 0.99376 0.97390 0.92136 1.21435 0.98258 0.95378 0.96930 1.21557 0.94875 0.94319 0.99089 1.21449 1.01781 1.02081 0.89229 1.18007 1.02153 0.93389 0.83752 1.91466 1.88095 1.85419 1.47087 1.18060 1.05011 0.93553 0.82505 1.91445 1.92700 1.82004 1.46710 0.92703 1.00280 0.98044 0.89290 0.92701 0.82372 0.79696 0.80430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.55 15 2 C 0.00 0.01 5.46 84.66 0.46 0.47 15 3 Si 0.97 44.53 29.54 68.60 2.03 46.55 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.55 -31.48 9.11 25.60 0.23 -31.25 15 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 15 9 C 0.04 2.00 4.96 29.85 0.15 2.15 15 10 C -0.07 -2.89 5.06 29.85 0.15 -2.74 15 11 C -0.09 -3.29 5.14 -19.83 -0.10 -3.39 15 12 C -0.10 -2.71 9.68 22.27 0.22 -2.50 15 13 C -0.08 -1.58 10.04 22.27 0.22 -1.36 15 14 C -0.13 -2.79 10.02 22.30 0.22 -2.56 15 15 C 0.05 1.47 7.31 22.41 0.16 1.64 15 16 F -0.14 -4.62 17.18 44.97 0.77 -3.84 15 17 C 0.03 1.09 7.25 22.41 0.16 1.25 15 18 F -0.15 -6.56 16.48 44.97 0.74 -5.82 15 19 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 20 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 15 21 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 22 H 0.09 3.33 8.05 -2.39 -0.02 3.31 15 23 H 0.05 2.39 7.79 -2.39 -0.02 2.37 15 24 H 0.16 3.52 8.06 -2.91 -0.02 3.49 15 25 H 0.19 1.87 8.06 -2.91 -0.02 1.84 15 26 H 0.18 2.52 8.06 -2.91 -0.02 2.50 15 Total: -1.00 -69.46 244.18 6.89 -62.57 By element: Atomic # 1 Polarization: -4.81 SS G_CDS: 1.18 Total: -3.63 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 1.88 Total: -38.28 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.28 Total: -57.55 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 1.51 Total: -9.66 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.46 6.89 -62.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931539.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.128 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds